miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 69812 0.73 0.392207
Target:  5'- gGGCCGCCCCAcggaacGGCCGCgauacacUUGGUcCGGg -3'
miRNA:   3'- gCUGGCGGGGU------UUGGCG-------AGCCAcGCC- -5'
5233 5' -59.7 NC_001798.1 + 76578 0.73 0.417765
Target:  5'- gCGACCgGCCCCGcGCCGUacgucgaCGGggGCGGg -3'
miRNA:   3'- -GCUGG-CGGGGUuUGGCGa------GCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 31137 0.73 0.393015
Target:  5'- aGAgCGCCCCGG--CGCgggggcggCGGUGCGGg -3'
miRNA:   3'- gCUgGCGGGGUUugGCGa-------GCCACGCC- -5'
5233 5' -59.7 NC_001798.1 + 131778 0.73 0.40941
Target:  5'- aCGACCGCCCCuuccACCGuCUCaucGUGCaGGu -3'
miRNA:   3'- -GCUGGCGGGGuu--UGGC-GAGc--CACG-CC- -5'
5233 5' -59.7 NC_001798.1 + 29044 0.73 0.384979
Target:  5'- gCGACCGCCCCGcGCCGgCUuccCGGUaUGGu -3'
miRNA:   3'- -GCUGGCGGGGUuUGGC-GA---GCCAcGCC- -5'
5233 5' -59.7 NC_001798.1 + 9640 0.73 0.401159
Target:  5'- aGcACCGCCCCGAggcgcagcggGCCGCgcgCGGagggcGCGGg -3'
miRNA:   3'- gC-UGGCGGGGUU----------UGGCGa--GCCa----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 25590 0.72 0.47901
Target:  5'- gGACCugGCCgCGGGCCGCgcCGGggGCGGg -3'
miRNA:   3'- gCUGG--CGGgGUUUGGCGa-GCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 132132 0.72 0.434784
Target:  5'- aGGCgGCCCUgcGCCGC-CGGgggccgGCGGg -3'
miRNA:   3'- gCUGgCGGGGuuUGGCGaGCCa-----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 135061 0.72 0.469984
Target:  5'- cCGGCCGCCuCCugcCCGCcuuUCGGgaaGCGGu -3'
miRNA:   3'- -GCUGGCGG-GGuuuGGCG---AGCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 51935 0.72 0.461045
Target:  5'- gGGCCGCCgCCGugccGCUGCUCaGcGCGGg -3'
miRNA:   3'- gCUGGCGG-GGUu---UGGCGAGcCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 143364 0.72 0.452197
Target:  5'- cCGGCUcuccgucgagagGCCCCAcGugCGCgucCGGUGCGGu -3'
miRNA:   3'- -GCUGG------------CGGGGU-UugGCGa--GCCACGCC- -5'
5233 5' -59.7 NC_001798.1 + 97216 0.72 0.458381
Target:  5'- aGACCGCCgCGguGGCCGUggagcuggcgcuguUCGGgcgGCGGg -3'
miRNA:   3'- gCUGGCGGgGU--UUGGCG--------------AGCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 25070 0.72 0.460156
Target:  5'- aGAgccCCGCCCCGGccagggcGCCGC-CGG-GCGGc -3'
miRNA:   3'- gCU---GGCGGGGUU-------UGGCGaGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 64488 0.72 0.461045
Target:  5'- aGGCCGUCUUGAACCGC-CGGaggggguggGCGGg -3'
miRNA:   3'- gCUGGCGGGGUUUGGCGaGCCa--------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 58684 0.72 0.47901
Target:  5'- -cACCGCCgCCGucagGGCCGCggCGGcGCGGg -3'
miRNA:   3'- gcUGGCGG-GGU----UUGGCGa-GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 153364 0.72 0.469984
Target:  5'- uGACCGCCUCGGccGCCGCcacgCGGcGcCGGa -3'
miRNA:   3'- gCUGGCGGGGUU--UGGCGa---GCCaC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 68592 0.71 0.488121
Target:  5'- gGGCCGCCuCCAGuCCGCgCGG-GgGGa -3'
miRNA:   3'- gCUGGCGG-GGUUuGGCGaGCCaCgCC- -5'
5233 5' -59.7 NC_001798.1 + 41538 0.71 0.497312
Target:  5'- uGugCGCCCCGGcggggcgcACCGCguaaauacaUCGGUggaGCGGa -3'
miRNA:   3'- gCugGCGGGGUU--------UGGCG---------AGCCA---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 108596 0.71 0.486292
Target:  5'- gCGGCCGCgCCGGACCGCgagGGgcuuacguucccGCGGg -3'
miRNA:   3'- -GCUGGCGgGGUUUGGCGag-CCa-----------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 23648 0.71 0.488121
Target:  5'- gGGCCGCCUgGAgcGCCGC-CGGgcccgcgcgGCGGu -3'
miRNA:   3'- gCUGGCGGGgUU--UGGCGaGCCa--------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.