miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 70209 0.71 0.515922
Target:  5'- cCGGCCGCCCUcccccucgagcGAGCCGg-CGGgcagcGCGGa -3'
miRNA:   3'- -GCUGGCGGGG-----------UUUGGCgaGCCa----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 150180 0.71 0.525331
Target:  5'- -cGCCGCCCCcu-CCGCggcgUGGgggGCGGc -3'
miRNA:   3'- gcUGGCGGGGuuuGGCGa---GCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 108596 0.71 0.486292
Target:  5'- gCGGCCGCgCCGGACCGCgagGGgcuuacguucccGCGGg -3'
miRNA:   3'- -GCUGGCGgGGUUUGGCGag-CCa-----------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 23648 0.71 0.488121
Target:  5'- gGGCCGCCUgGAgcGCCGC-CGGgcccgcgcgGCGGu -3'
miRNA:   3'- gCUGGCGGGgUU--UGGCGaGCCa--------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 116302 0.71 0.50658
Target:  5'- gGACCGCCaCCgAGACUGC-CGGauugacGCGGg -3'
miRNA:   3'- gCUGGCGG-GG-UUUGGCGaGCCa-----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 69116 0.71 0.515922
Target:  5'- aGGCCuccaggagcugGCCCCAGGCCucggccagucGCUCGGUcugccggccggGCGGa -3'
miRNA:   3'- gCUGG-----------CGGGGUUUGG----------CGAGCCA-----------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 134916 0.71 0.515922
Target:  5'- cCGGCCGCCgCC--GCCGCcgagUCGGcgcgugaccuggUGCGGg -3'
miRNA:   3'- -GCUGGCGG-GGuuUGGCG----AGCC------------ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 28964 0.71 0.515922
Target:  5'- -cGCCGCCCC--GCCGCUCcgcccgccccaGGggGCGGc -3'
miRNA:   3'- gcUGGCGGGGuuUGGCGAG-----------CCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 21787 0.71 0.50658
Target:  5'- aCGGcCCGCCCCccguccGGGcCCGcCUCGGgGCGGa -3'
miRNA:   3'- -GCU-GGCGGGG------UUU-GGC-GAGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 31853 0.71 0.515922
Target:  5'- -uGCCGCCCCccacGCCGCggaGGggGCGGc -3'
miRNA:   3'- gcUGGCGGGGuu--UGGCGag-CCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 147240 0.71 0.525331
Target:  5'- gGGCCccgggGCCCCGGGCCGCgcCGGcgGCGu -3'
miRNA:   3'- gCUGG-----CGGGGUUUGGCGa-GCCa-CGCc -5'
5233 5' -59.7 NC_001798.1 + 68592 0.71 0.488121
Target:  5'- gGGCCGCCuCCAGuCCGCgCGG-GgGGa -3'
miRNA:   3'- gCUGGCGG-GGUUuGGCGaGCCaCgCC- -5'
5233 5' -59.7 NC_001798.1 + 83930 0.7 0.573246
Target:  5'- -cACCGCCCCGuagucauccuggGACCGCcUGGaccgGCGGc -3'
miRNA:   3'- gcUGGCGGGGU------------UUGGCGaGCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 5897 0.7 0.553927
Target:  5'- gCGGgcuCCGCCCCGAGgcgggcCCGgaCGGgggGCGGg -3'
miRNA:   3'- -GCU---GGCGGGGUUU------GGCgaGCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 53415 0.7 0.544339
Target:  5'- uCGGCCGCCaagCAGG-CGCUCGGcgagGUGGa -3'
miRNA:   3'- -GCUGGCGGg--GUUUgGCGAGCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 94992 0.7 0.553927
Target:  5'- gCGGCCGCCUgGGccCCGCagggCGGcGCGGg -3'
miRNA:   3'- -GCUGGCGGGgUUu-GGCGa---GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 98403 0.7 0.553927
Target:  5'- aCGGCUGCaUCGGAccCCGCUCGGUcGUGGu -3'
miRNA:   3'- -GCUGGCGgGGUUU--GGCGAGCCA-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 70415 0.7 0.581993
Target:  5'- uGGCCGagaaccuCCCCGGGCUGCU-GGUGCa- -3'
miRNA:   3'- gCUGGC-------GGGGUUUGGCGAgCCACGcc -5'
5233 5' -59.7 NC_001798.1 + 25150 0.7 0.563565
Target:  5'- gCGGCCGCCCCuc-CCGCggGGgccGCGc -3'
miRNA:   3'- -GCUGGCGGGGuuuGGCGagCCa--CGCc -5'
5233 5' -59.7 NC_001798.1 + 135352 0.7 0.563565
Target:  5'- aCGcCUGCCCCGcgcuccggcAGCUGCUCGGcGgGGu -3'
miRNA:   3'- -GCuGGCGGGGU---------UUGGCGAGCCaCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.