miRNA display CGI


Results 61 - 80 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 83930 0.7 0.573246
Target:  5'- -cACCGCCCCGuagucauccuggGACCGCcUGGaccgGCGGc -3'
miRNA:   3'- gcUGGCGGGGU------------UUGGCGaGCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 94992 0.7 0.553927
Target:  5'- gCGGCCGCCUgGGccCCGCagggCGGcGCGGg -3'
miRNA:   3'- -GCUGGCGGGgUUu-GGCGa---GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 5897 0.7 0.553927
Target:  5'- gCGGgcuCCGCCCCGAGgcgggcCCGgaCGGgggGCGGg -3'
miRNA:   3'- -GCU---GGCGGGGUUU------GGCgaGCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 98403 0.7 0.553927
Target:  5'- aCGGCUGCaUCGGAccCCGCUCGGUcGUGGu -3'
miRNA:   3'- -GCUGGCGgGGUUU--GGCGAGCCA-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 98601 0.7 0.592719
Target:  5'- cCGGCgGCCCCGGcggccccCCGCgccUCGG-GCGGc -3'
miRNA:   3'- -GCUGgCGGGGUUu------GGCG---AGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 53415 0.7 0.544339
Target:  5'- uCGGCCGCCaagCAGG-CGCUCGGcgagGUGGa -3'
miRNA:   3'- -GCUGGCGGg--GUUUgGCGAGCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 135352 0.7 0.563565
Target:  5'- aCGcCUGCCCCGcgcuccggcAGCUGCUCGGcGgGGu -3'
miRNA:   3'- -GCuGGCGGGGU---------UUGGCGAGCCaCgCC- -5'
5233 5' -59.7 NC_001798.1 + 150901 0.69 0.612298
Target:  5'- -cGCCGCCCCcgcGCCGgggcgcucUUCGGgggGCGGg -3'
miRNA:   3'- gcUGGCGGGGuu-UGGC--------GAGCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 82275 0.69 0.622111
Target:  5'- cCGGuuGCCCCGAGCgaGCcUUuGUGCGGu -3'
miRNA:   3'- -GCUggCGGGGUUUGg-CG-AGcCACGCC- -5'
5233 5' -59.7 NC_001798.1 + 5216 0.69 0.651565
Target:  5'- aCGAUCGCCCCGucgccuGGCUGauauagucCUCGGggcgcGCGGg -3'
miRNA:   3'- -GCUGGCGGGGU------UUGGC--------GAGCCa----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 89148 0.69 0.612298
Target:  5'- gCGACgGCCUCGGGCCGCagGGagaGCGu -3'
miRNA:   3'- -GCUGgCGGGGUUUGGCGagCCa--CGCc -5'
5233 5' -59.7 NC_001798.1 + 22322 0.69 0.651565
Target:  5'- gGGCCGCCgCCAcggacgcgGACgCGCgggcgUCGGgGCGGg -3'
miRNA:   3'- gCUGGCGG-GGU--------UUG-GCG-----AGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 55270 0.69 0.641752
Target:  5'- gCGACCGCCggCCccACCGuCUCGGUuucCGGc -3'
miRNA:   3'- -GCUGGCGG--GGuuUGGC-GAGCCAc--GCC- -5'
5233 5' -59.7 NC_001798.1 + 28818 0.69 0.602498
Target:  5'- -cGCCGCgggCCCGGGCCG-UCGG-GCGGu -3'
miRNA:   3'- gcUGGCG---GGGUUUGGCgAGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 11947 0.69 0.602498
Target:  5'- gCGGCUGCCgcgCCAGACCcaGCUCcaGG-GCGGa -3'
miRNA:   3'- -GCUGGCGG---GGUUUGG--CGAG--CCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 54371 0.69 0.602498
Target:  5'- gCGuCCGgCCCAccggggGGCCGCggcgCGGUcgGCGGg -3'
miRNA:   3'- -GCuGGCgGGGU------UUGGCGa---GCCA--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 64109 0.69 0.609356
Target:  5'- gGGCCGCCCCGgcccccGACgCGUggguaucuagggggUCGGUGCu- -3'
miRNA:   3'- gCUGGCGGGGU------UUG-GCG--------------AGCCACGcc -5'
5233 5' -59.7 NC_001798.1 + 23686 0.69 0.622111
Target:  5'- cCGGCCGCgacgCCaCGGGCCGCUucaCGGccggGCGGc -3'
miRNA:   3'- -GCUGGCG----GG-GUUUGGCGA---GCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 79178 0.69 0.631931
Target:  5'- -cACCGCCCU-GugCGCcCGGcUGCGGg -3'
miRNA:   3'- gcUGGCGGGGuUugGCGaGCC-ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 7059 0.69 0.631931
Target:  5'- cCGGCCcacCCCCAAAccCCGgUUGGgGCGGg -3'
miRNA:   3'- -GCUGGc--GGGGUUU--GGCgAGCCaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.