miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 68282 1.1 0.00152
Target:  5'- cCGACCGCCCCAAACCGCUCGGUGCGGu -3'
miRNA:   3'- -GCUGGCGGGGUUUGGCGAGCCACGCC- -5'
5233 5' -59.7 NC_001798.1 + 71070 0.81 0.126244
Target:  5'- uCGACCGCCCUAAGCCGCgucagcccgCGGU-CGGc -3'
miRNA:   3'- -GCUGGCGGGGUUUGGCGa--------GCCAcGCC- -5'
5233 5' -59.7 NC_001798.1 + 74340 0.81 0.132688
Target:  5'- aCGACCGCCCCAAGgUGCggUGG-GCGGg -3'
miRNA:   3'- -GCUGGCGGGGUUUgGCGa-GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 56378 0.8 0.146492
Target:  5'- -cACCGCCCgGAucaccuGCCGCUCGGUGgGGu -3'
miRNA:   3'- gcUGGCGGGgUU------UGGCGAGCCACgCC- -5'
5233 5' -59.7 NC_001798.1 + 35562 0.78 0.196049
Target:  5'- cCGGCCcgGCCCCGGagcccgcggcGCUGCUCGGcUGCGGc -3'
miRNA:   3'- -GCUGG--CGGGGUU----------UGGCGAGCC-ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 35748 0.78 0.200782
Target:  5'- cCGGCCGCCCacuccCCGCUCGGccucuccggcUGCGGu -3'
miRNA:   3'- -GCUGGCGGGguuu-GGCGAGCC----------ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 62254 0.78 0.205614
Target:  5'- gGACCGCCCCGAGCCgaucccaggcccGC-CGG-GCGGc -3'
miRNA:   3'- gCUGGCGGGGUUUGG------------CGaGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 48360 0.77 0.236754
Target:  5'- gCGGCCGCCCgGGGCCGCcccgCGGgGCGu -3'
miRNA:   3'- -GCUGGCGGGgUUUGGCGa---GCCaCGCc -5'
5233 5' -59.7 NC_001798.1 + 37529 0.76 0.265641
Target:  5'- cCGACaCGCCCCAAGCCccaGggUGGUGUGGc -3'
miRNA:   3'- -GCUG-GCGGGGUUUGG---CgaGCCACGCC- -5'
5233 5' -59.7 NC_001798.1 + 23206 0.75 0.297318
Target:  5'- aCGACCGCgaCgCGGGCCGCUgGGUccGCGGa -3'
miRNA:   3'- -GCUGGCGg-G-GUUUGGCGAgCCA--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 78658 0.75 0.318388
Target:  5'- gCGACCGUggccaagacgcucgaCCAGGCgCGCUCGGUGgCGGa -3'
miRNA:   3'- -GCUGGCGg--------------GGUUUG-GCGAGCCAC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 37164 0.75 0.324712
Target:  5'- cCGcGCCGCCUggCGGGCCGCUCGGcGCGc -3'
miRNA:   3'- -GC-UGGCGGG--GUUUGGCGAGCCaCGCc -5'
5233 5' -59.7 NC_001798.1 + 53629 0.75 0.331848
Target:  5'- gGGCCGCCgcggCCAAguacGCCGCcgCGGUGgCGGg -3'
miRNA:   3'- gCUGGCGG----GGUU----UGGCGa-GCCAC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 144347 0.74 0.339098
Target:  5'- cCGACaGCCCCAGggGCUGUUCGGgggucguagaUGCGGa -3'
miRNA:   3'- -GCUGgCGGGGUU--UGGCGAGCC----------ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 54297 0.74 0.361532
Target:  5'- gGGCCgcccugGCCCCGGACCuGCuUCGGaGCGGa -3'
miRNA:   3'- gCUGG------CGGGGUUUGG-CG-AGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 128425 0.74 0.369237
Target:  5'- aCGACCGCCUCca--CGCUgCGGUGgGGc -3'
miRNA:   3'- -GCUGGCGGGGuuugGCGA-GCCACgCC- -5'
5233 5' -59.7 NC_001798.1 + 84675 0.74 0.377052
Target:  5'- uGACCGCCgCGAACCGUucgcgcuuUCGG-GCGa -3'
miRNA:   3'- gCUGGCGGgGUUUGGCG--------AGCCaCGCc -5'
5233 5' -59.7 NC_001798.1 + 24397 0.74 0.377052
Target:  5'- -cGCCGCCCCGuuGCCG-UCGGcgGCGGc -3'
miRNA:   3'- gcUGGCGGGGUu-UGGCgAGCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 131553 0.74 0.377052
Target:  5'- gCGAgCGCCCC-GACgGCcCGGUGCGu -3'
miRNA:   3'- -GCUgGCGGGGuUUGgCGaGCCACGCc -5'
5233 5' -59.7 NC_001798.1 + 29044 0.73 0.384979
Target:  5'- gCGACCGCCCCGcGCCGgCUuccCGGUaUGGu -3'
miRNA:   3'- -GCUGGCGGGGUuUGGC-GA---GCCAcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.