Results 41 - 60 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5233 | 5' | -59.7 | NC_001798.1 | + | 116302 | 0.71 | 0.50658 |
Target: 5'- gGACCGCCaCCgAGACUGC-CGGauugacGCGGg -3' miRNA: 3'- gCUGGCGG-GG-UUUGGCGaGCCa-----CGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 21787 | 0.71 | 0.50658 |
Target: 5'- aCGGcCCGCCCCccguccGGGcCCGcCUCGGgGCGGa -3' miRNA: 3'- -GCU-GGCGGGG------UUU-GGC-GAGCCaCGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 31853 | 0.71 | 0.515922 |
Target: 5'- -uGCCGCCCCccacGCCGCggaGGggGCGGc -3' miRNA: 3'- gcUGGCGGGGuu--UGGCGag-CCa-CGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 28964 | 0.71 | 0.515922 |
Target: 5'- -cGCCGCCCC--GCCGCUCcgcccgccccaGGggGCGGc -3' miRNA: 3'- gcUGGCGGGGuuUGGCGAG-----------CCa-CGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 69116 | 0.71 | 0.515922 |
Target: 5'- aGGCCuccaggagcugGCCCCAGGCCucggccagucGCUCGGUcugccggccggGCGGa -3' miRNA: 3'- gCUGG-----------CGGGGUUUGG----------CGAGCCA-----------CGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 134916 | 0.71 | 0.515922 |
Target: 5'- cCGGCCGCCgCC--GCCGCcgagUCGGcgcgugaccuggUGCGGg -3' miRNA: 3'- -GCUGGCGG-GGuuUGGCG----AGCC------------ACGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 70209 | 0.71 | 0.515922 |
Target: 5'- cCGGCCGCCCUcccccucgagcGAGCCGg-CGGgcagcGCGGa -3' miRNA: 3'- -GCUGGCGGGG-----------UUUGGCgaGCCa----CGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 147240 | 0.71 | 0.525331 |
Target: 5'- gGGCCccgggGCCCCGGGCCGCgcCGGcgGCGu -3' miRNA: 3'- gCUGG-----CGGGGUUUGGCGa-GCCa-CGCc -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 150180 | 0.71 | 0.525331 |
Target: 5'- -cGCCGCCCCcu-CCGCggcgUGGgggGCGGc -3' miRNA: 3'- gcUGGCGGGGuuuGGCGa---GCCa--CGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 32031 | 0.71 | 0.533855 |
Target: 5'- gCGACCGCggCCaCGGGCCGCUCGccccggcGUccGCGGg -3' miRNA: 3'- -GCUGGCG--GG-GUUUGGCGAGC-------CA--CGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 97498 | 0.71 | 0.534805 |
Target: 5'- gGGCCgaggaggaagaGCCCCGGGCCGCcgCGGaggaggggggGCGGa -3' miRNA: 3'- gCUGG-----------CGGGGUUUGGCGa-GCCa---------CGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 118608 | 0.71 | 0.534805 |
Target: 5'- ---gCGCCCCGAuGCCGCggcgcugcagCGGUGCGa -3' miRNA: 3'- gcugGCGGGGUU-UGGCGa---------GCCACGCc -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 53415 | 0.7 | 0.544339 |
Target: 5'- uCGGCCGCCaagCAGG-CGCUCGGcgagGUGGa -3' miRNA: 3'- -GCUGGCGGg--GUUUgGCGAGCCa---CGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 5897 | 0.7 | 0.553927 |
Target: 5'- gCGGgcuCCGCCCCGAGgcgggcCCGgaCGGgggGCGGg -3' miRNA: 3'- -GCU---GGCGGGGUUU------GGCgaGCCa--CGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 98403 | 0.7 | 0.553927 |
Target: 5'- aCGGCUGCaUCGGAccCCGCUCGGUcGUGGu -3' miRNA: 3'- -GCUGGCGgGGUUU--GGCGAGCCA-CGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 121288 | 0.7 | 0.553927 |
Target: 5'- gCGGCCGCCCCGA--CGgUgGG-GCGGc -3' miRNA: 3'- -GCUGGCGGGGUUugGCgAgCCaCGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 94992 | 0.7 | 0.553927 |
Target: 5'- gCGGCCGCCUgGGccCCGCagggCGGcGCGGg -3' miRNA: 3'- -GCUGGCGGGgUUu-GGCGa---GCCaCGCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 25150 | 0.7 | 0.563565 |
Target: 5'- gCGGCCGCCCCuc-CCGCggGGgccGCGc -3' miRNA: 3'- -GCUGGCGGGGuuuGGCGagCCa--CGCc -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 135352 | 0.7 | 0.563565 |
Target: 5'- aCGcCUGCCCCGcgcuccggcAGCUGCUCGGcGgGGu -3' miRNA: 3'- -GCuGGCGGGGU---------UUGGCGAGCCaCgCC- -5' |
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5233 | 5' | -59.7 | NC_001798.1 | + | 83930 | 0.7 | 0.573246 |
Target: 5'- -cACCGCCCCGuagucauccuggGACCGCcUGGaccgGCGGc -3' miRNA: 3'- gcUGGCGGGGU------------UUGGCGaGCCa---CGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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