miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 139178 0.66 0.787445
Target:  5'- gGACCGgacgacguuguacacCCCCuGACC-CUCGGUGUa- -3'
miRNA:   3'- gCUGGC---------------GGGGuUUGGcGAGCCACGcc -5'
5233 5' -59.7 NC_001798.1 + 152388 0.66 0.78392
Target:  5'- -cGCCGCUCCG--UCGCUCGcaGUGcCGGg -3'
miRNA:   3'- gcUGGCGGGGUuuGGCGAGC--CAC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 91095 0.66 0.78392
Target:  5'- gCGGCCGUCgUGGACC-C-CGGUGCGc -3'
miRNA:   3'- -GCUGGCGGgGUUUGGcGaGCCACGCc -5'
5233 5' -59.7 NC_001798.1 + 82012 0.66 0.78392
Target:  5'- gCGACCGCCgCCGcGGCCGC-CGccagacaacaGCGGg -3'
miRNA:   3'- -GCUGGCGG-GGU-UUGGCGaGCca--------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 2988 0.66 0.78392
Target:  5'- gCGGCCgGCCCgCGGGCCccggGCgCGGgggcgcgGCGGg -3'
miRNA:   3'- -GCUGG-CGGG-GUUUGG----CGaGCCa------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 107444 0.66 0.78392
Target:  5'- gCGACCccgcGCCCCGAccCCGaggaCGGcGCGGg -3'
miRNA:   3'- -GCUGG----CGGGGUUu-GGCga--GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 113231 0.66 0.78392
Target:  5'- gCGucuuCCGCCCCAcACCcaGC-CGGUcuuuuccaaGCGGg -3'
miRNA:   3'- -GCu---GGCGGGGUuUGG--CGaGCCA---------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 95281 0.66 0.783035
Target:  5'- uGGCCuGCCCCAgggccggguuuguGugCGCggcgucgagucUCGGggGCGGg -3'
miRNA:   3'- gCUGG-CGGGGU-------------UugGCG-----------AGCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 22262 0.66 0.783035
Target:  5'- cCGcCCGCgCCGGgcgcuaaugagauGCCGCgCGG-GCGGa -3'
miRNA:   3'- -GCuGGCGgGGUU-------------UGGCGaGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 4451 0.66 0.78215
Target:  5'- cCGGguaCGCCCCGcgGACCGCggacgucgucucCGGUccGCGGa -3'
miRNA:   3'- -GCUg--GCGGGGU--UUGGCGa-----------GCCA--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 46165 0.66 0.781263
Target:  5'- aCGACCGCCCCAGcACauaGCaggccucugguccgUCGGccGCGc -3'
miRNA:   3'- -GCUGGCGGGGUU-UGg--CG--------------AGCCa-CGCc -5'
5233 5' -59.7 NC_001798.1 + 152144 0.66 0.77502
Target:  5'- gCGACCacCCCCAAcCCGCagcCGG-GUGGu -3'
miRNA:   3'- -GCUGGc-GGGGUUuGGCGa--GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 2458 0.66 0.77502
Target:  5'- -aGCCGCCCUgcgggucgGGGCC-CUCGGcgggccgGCGGg -3'
miRNA:   3'- gcUGGCGGGG--------UUUGGcGAGCCa------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 109367 0.66 0.77502
Target:  5'- uGGCCGCCCggggagCAGcgggcugcgcgGCCGaCUCGGUGUu- -3'
miRNA:   3'- gCUGGCGGG------GUU-----------UGGC-GAGCCACGcc -5'
5233 5' -59.7 NC_001798.1 + 141146 0.66 0.77502
Target:  5'- gGGCCGCCgacaCCAgcGACCGCUCuccgggggaGcGUGCGu -3'
miRNA:   3'- gCUGGCGG----GGU--UUGGCGAG---------C-CACGCc -5'
5233 5' -59.7 NC_001798.1 + 137941 0.66 0.77502
Target:  5'- cCGGCCGCCCgGuccGCCGCgCGcUGCu- -3'
miRNA:   3'- -GCUGGCGGGgUu--UGGCGaGCcACGcc -5'
5233 5' -59.7 NC_001798.1 + 49021 0.67 0.766003
Target:  5'- -aGCCGCCCCu--CCGCUguacgccacCGGU-CGGc -3'
miRNA:   3'- gcUGGCGGGGuuuGGCGA---------GCCAcGCC- -5'
5233 5' -59.7 NC_001798.1 + 140191 0.67 0.766003
Target:  5'- gGGCCGCCU---GCgGC-CGGUGCuGGu -3'
miRNA:   3'- gCUGGCGGGguuUGgCGaGCCACG-CC- -5'
5233 5' -59.7 NC_001798.1 + 85196 0.67 0.766003
Target:  5'- gCGuGCCGCCCgCGAGCgCGCUCGacgaggacGUGGa -3'
miRNA:   3'- -GC-UGGCGGG-GUUUG-GCGAGCca------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 3989 0.67 0.766003
Target:  5'- uCGACCG-CCgGGGCCGCcCGGccgugaaGCGGc -3'
miRNA:   3'- -GCUGGCgGGgUUUGGCGaGCCa------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.