miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 157 0.67 0.747647
Target:  5'- -cGCCGCCCCuccccCCGCgCGccGCGGg -3'
miRNA:   3'- gcUGGCGGGGuuu--GGCGaGCcaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 1404 0.68 0.708922
Target:  5'- gGGCCGCagcggcgcgCCCAGGCCccagcgcgcgcagGCgCGGUGCGa -3'
miRNA:   3'- gCUGGCG---------GGGUUUGG-------------CGaGCCACGCc -5'
5233 5' -59.7 NC_001798.1 + 1694 0.68 0.69157
Target:  5'- aGAcccCCGgCCCGAACaCGCggccggaggccagcaCGGUGCGGc -3'
miRNA:   3'- gCU---GGCgGGGUUUG-GCGa--------------GCCACGCC- -5'
5233 5' -59.7 NC_001798.1 + 2458 0.66 0.77502
Target:  5'- -aGCCGCCCUgcgggucgGGGCC-CUCGGcgggccgGCGGg -3'
miRNA:   3'- gcUGGCGGGG--------UUUGGcGAGCCa------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 2988 0.66 0.78392
Target:  5'- gCGGCCgGCCCgCGGGCCccggGCgCGGgggcgcgGCGGg -3'
miRNA:   3'- -GCUGG-CGGG-GUUUGG----CGaGCCa------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 3148 0.68 0.68089
Target:  5'- cCGGCCGCCgCCAccACCGC-CGGcGCc- -3'
miRNA:   3'- -GCUGGCGG-GGUu-UGGCGaGCCaCGcc -5'
5233 5' -59.7 NC_001798.1 + 3989 0.67 0.766003
Target:  5'- uCGACCG-CCgGGGCCGCcCGGccgugaaGCGGc -3'
miRNA:   3'- -GCUGGCgGGgUUUGGCGaGCCa------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 4032 0.68 0.661364
Target:  5'- gCGGCCGgCCaccGCCGCgCGGgcccgGCGGc -3'
miRNA:   3'- -GCUGGCgGGguuUGGCGaGCCa----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 4451 0.66 0.78215
Target:  5'- cCGGguaCGCCCCGcgGACCGCggacgucgucucCGGUccGCGGa -3'
miRNA:   3'- -GCUg--GCGGGGU--UUGGCGa-----------GCCA--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 4754 0.67 0.728918
Target:  5'- gGGCCGCCUCGucGGCaucgGCaUCGGcgGCGGc -3'
miRNA:   3'- gCUGGCGGGGU--UUGg---CG-AGCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 5185 0.66 0.801335
Target:  5'- gCGGCCGCgUCGguAGCCGCgcUCcGUGUGGn -3'
miRNA:   3'- -GCUGGCGgGGU--UUGGCG--AGcCACGCC- -5'
5233 5' -59.7 NC_001798.1 + 5216 0.69 0.651565
Target:  5'- aCGAUCGCCCCGucgccuGGCUGauauagucCUCGGggcgcGCGGg -3'
miRNA:   3'- -GCUGGCGGGGU------UUGGC--------GAGCCa----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 5897 0.7 0.553927
Target:  5'- gCGGgcuCCGCCCCGAGgcgggcCCGgaCGGgggGCGGg -3'
miRNA:   3'- -GCU---GGCGGGGUUU------GGCgaGCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 7059 0.69 0.631931
Target:  5'- cCGGCCcacCCCCAAAccCCGgUUGGgGCGGg -3'
miRNA:   3'- -GCUGGc--GGGGUUU--GGCgAGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 9640 0.73 0.401159
Target:  5'- aGcACCGCCCCGAggcgcagcggGCCGCgcgCGGagggcGCGGg -3'
miRNA:   3'- gC-UGGCGGGGUU----------UGGCGa--GCCa----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 11947 0.69 0.602498
Target:  5'- gCGGCUGCCgcgCCAGACCcaGCUCcaGG-GCGGa -3'
miRNA:   3'- -GCUGGCGG---GGUUUGG--CGAG--CCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 14083 0.68 0.690601
Target:  5'- cCGACCGCUCCAuAGCUGCUguacccCGG-GCa- -3'
miRNA:   3'- -GCUGGCGGGGU-UUGGCGA------GCCaCGcc -5'
5233 5' -59.7 NC_001798.1 + 14750 0.67 0.738325
Target:  5'- -cACC-CCCUAAucCCGCUCGG-GUGGc -3'
miRNA:   3'- gcUGGcGGGGUUu-GGCGAGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 16204 0.69 0.631931
Target:  5'- gGGCCGCCCUccgcacgcGCCGCcugUGGggggGCGGu -3'
miRNA:   3'- gCUGGCGGGGuu------UGGCGa--GCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 17117 0.7 0.582967
Target:  5'- cCGGCCGCCCgCGAGCgGUagugcgCGGUGaGGc -3'
miRNA:   3'- -GCUGGCGGG-GUUUGgCGa-----GCCACgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.