miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 28964 0.71 0.515922
Target:  5'- -cGCCGCCCC--GCCGCUCcgcccgccccaGGggGCGGc -3'
miRNA:   3'- gcUGGCGGGGuuUGGCGAG-----------CCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 29044 0.73 0.384979
Target:  5'- gCGACCGCCCCGcGCCGgCUuccCGGUaUGGu -3'
miRNA:   3'- -GCUGGCGGGGUuUGGC-GA---GCCAcGCC- -5'
5233 5' -59.7 NC_001798.1 + 29803 0.68 0.671142
Target:  5'- gGACCccgGCCCCGAGCgGC-CGccGCGGc -3'
miRNA:   3'- gCUGG---CGGGGUUUGgCGaGCcaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 29952 0.67 0.728918
Target:  5'- gGGCCGacCCCCGGcCCGCUuaagCGGU-CGGg -3'
miRNA:   3'- gCUGGC--GGGGUUuGGCGA----GCCAcGCC- -5'
5233 5' -59.7 NC_001798.1 + 31137 0.73 0.393015
Target:  5'- aGAgCGCCCCGG--CGCgggggcggCGGUGCGGg -3'
miRNA:   3'- gCUgGCGGGGUUugGCGa-------GCCACGCC- -5'
5233 5' -59.7 NC_001798.1 + 31853 0.71 0.515922
Target:  5'- -uGCCGCCCCccacGCCGCggaGGggGCGGc -3'
miRNA:   3'- gcUGGCGGGGuu--UGGCGag-CCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 32031 0.71 0.533855
Target:  5'- gCGACCGCggCCaCGGGCCGCUCGccccggcGUccGCGGg -3'
miRNA:   3'- -GCUGGCG--GG-GUUUGGCGAGC-------CA--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 34826 0.69 0.651565
Target:  5'- gCGcuCCGCCgggggcccgggCCGGACCGC-CGG-GCGGg -3'
miRNA:   3'- -GCu-GGCGG-----------GGUUUGGCGaGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 35562 0.78 0.196049
Target:  5'- cCGGCCcgGCCCCGGagcccgcggcGCUGCUCGGcUGCGGc -3'
miRNA:   3'- -GCUGG--CGGGGUU----------UGGCGAGCC-ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 35748 0.78 0.200782
Target:  5'- cCGGCCGCCCacuccCCGCUCGGccucuccggcUGCGGu -3'
miRNA:   3'- -GCUGGCGGGguuu-GGCGAGCC----------ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 36407 0.67 0.719434
Target:  5'- gGGCC-CCCCu-GCCGggCGGgGCGGu -3'
miRNA:   3'- gCUGGcGGGGuuUGGCgaGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 37164 0.75 0.324712
Target:  5'- cCGcGCCGCCUggCGGGCCGCUCGGcGCGc -3'
miRNA:   3'- -GC-UGGCGGG--GUUUGGCGAGCCaCGCc -5'
5233 5' -59.7 NC_001798.1 + 37382 0.66 0.801335
Target:  5'- uGGCCGCauguccgaCCGAGCCaC-CGG-GCGGg -3'
miRNA:   3'- gCUGGCGg-------GGUUUGGcGaGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 37529 0.76 0.265641
Target:  5'- cCGACaCGCCCCAAGCCccaGggUGGUGUGGc -3'
miRNA:   3'- -GCUG-GCGGGGUUUGG---CgaGCCACGCC- -5'
5233 5' -59.7 NC_001798.1 + 39670 0.7 0.592719
Target:  5'- uCGACCccgGCCCCGGcggcgaccucGCCGCccgccUCGGggaUGCGGu -3'
miRNA:   3'- -GCUGG---CGGGGUU----------UGGCG-----AGCC---ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 39780 0.67 0.734572
Target:  5'- cCGACCGCcugguCCCGAGgCGCgaccacacgccggUGGUcGCGGg -3'
miRNA:   3'- -GCUGGCG-----GGGUUUgGCGa------------GCCA-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 41538 0.71 0.497312
Target:  5'- uGugCGCCCCGGcggggcgcACCGCguaaauacaUCGGUggaGCGGa -3'
miRNA:   3'- gCugGCGGGGUU--------UGGCG---------AGCCA---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 46165 0.66 0.781263
Target:  5'- aCGACCGCCCCAGcACauaGCaggccucugguccgUCGGccGCGc -3'
miRNA:   3'- -GCUGGCGGGGUU-UGg--CG--------------AGCCa-CGCc -5'
5233 5' -59.7 NC_001798.1 + 48360 0.77 0.236754
Target:  5'- gCGGCCGCCCgGGGCCGCcccgCGGgGCGu -3'
miRNA:   3'- -GCUGGCGGGgUUUGGCGa---GCCaCGCc -5'
5233 5' -59.7 NC_001798.1 + 49021 0.67 0.766003
Target:  5'- -aGCCGCCCCu--CCGCUguacgccacCGGU-CGGc -3'
miRNA:   3'- gcUGGCGGGGuuuGGCGA---------GCCAcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.