miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 154495 0.67 0.747647
Target:  5'- -cGCCGCCCCuccccCCGCgCGccGCGGg -3'
miRNA:   3'- gcUGGCGGGGuuu--GGCGaGCcaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 154279 0.67 0.762365
Target:  5'- gCGugCGCagCCCGGGCCGUguugCGGgcccucuuaagggGCGGc -3'
miRNA:   3'- -GCugGCG--GGGUUUGGCGa---GCCa------------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 153364 0.72 0.469984
Target:  5'- uGACCGCCUCGGccGCCGCcacgCGGcGcCGGa -3'
miRNA:   3'- gCUGGCGGGGUU--UGGCGa---GCCaC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 153217 0.69 0.651565
Target:  5'- aGACCGCCC--GACgGCcCGGgcccGCGGc -3'
miRNA:   3'- gCUGGCGGGguUUGgCGaGCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 152492 0.68 0.709881
Target:  5'- aCGAUUcCCCCAAuaGCCGCgcgccccggCGGggGCGGa -3'
miRNA:   3'- -GCUGGcGGGGUU--UGGCGa--------GCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 152388 0.66 0.78392
Target:  5'- -cGCCGCUCCG--UCGCUCGcaGUGcCGGg -3'
miRNA:   3'- gcUGGCGGGGUuuGGCGAGC--CAC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 152227 0.68 0.700267
Target:  5'- gGuCUGCCgCGgcGGCCGCUCGGgGcCGGg -3'
miRNA:   3'- gCuGGCGGgGU--UUGGCGAGCCaC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 152144 0.66 0.77502
Target:  5'- gCGACCacCCCCAAcCCGCagcCGG-GUGGu -3'
miRNA:   3'- -GCUGGc-GGGGUUuGGCGa--GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 151594 0.67 0.719434
Target:  5'- gGGCUGCCCU--GgCGCUCGGccGgGGg -3'
miRNA:   3'- gCUGGCGGGGuuUgGCGAGCCa-CgCC- -5'
5233 5' -59.7 NC_001798.1 + 151264 0.68 0.68089
Target:  5'- aCGGCCGUgCCGgcccgcacGGCCGcCUCGGccuccacGCGGg -3'
miRNA:   3'- -GCUGGCGgGGU--------UUGGC-GAGCCa------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 150901 0.69 0.612298
Target:  5'- -cGCCGCCCCcgcGCCGgggcgcucUUCGGgggGCGGg -3'
miRNA:   3'- gcUGGCGGGGuu-UGGC--------GAGCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 150560 0.66 0.792694
Target:  5'- aGAgCGgCCCGGGgcCCGCggggCGGcGCGGa -3'
miRNA:   3'- gCUgGCgGGGUUU--GGCGa---GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 150180 0.71 0.525331
Target:  5'- -cGCCGCCCCcu-CCGCggcgUGGgggGCGGc -3'
miRNA:   3'- gcUGGCGGGGuuuGGCGa---GCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 148016 0.66 0.801335
Target:  5'- gCGcCCGuCCCCuuccucuACCGCgugggcgCGG-GCGGg -3'
miRNA:   3'- -GCuGGC-GGGGuu-----UGGCGa------GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 147240 0.71 0.525331
Target:  5'- gGGCCccgggGCCCCGGGCCGCgcCGGcgGCGu -3'
miRNA:   3'- gCUGG-----CGGGGUUUGGCGa-GCCa-CGCc -5'
5233 5' -59.7 NC_001798.1 + 147152 0.67 0.738325
Target:  5'- cCGGCCggggGUCCCGgguAGCCGCcCGGcgccggGCGGa -3'
miRNA:   3'- -GCUGG----CGGGGU---UUGGCGaGCCa-----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 147081 0.66 0.792694
Target:  5'- gCGGCCGCCCCcuccggcGCCGCgCGuucGCGa -3'
miRNA:   3'- -GCUGGCGGGGuu-----UGGCGaGCca-CGCc -5'
5233 5' -59.7 NC_001798.1 + 145895 0.66 0.809835
Target:  5'- cCGACCGCCgCCGcgccccACCGg-CGGgaucGCGGc -3'
miRNA:   3'- -GCUGGCGG-GGUu-----UGGCgaGCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 145619 0.66 0.809835
Target:  5'- cCGAccCCGCCCCAccgccCCGCcCGGcagGgGGg -3'
miRNA:   3'- -GCU--GGCGGGGUuu---GGCGaGCCa--CgCC- -5'
5233 5' -59.7 NC_001798.1 + 144347 0.74 0.339098
Target:  5'- cCGACaGCCCCAGggGCUGUUCGGgggucguagaUGCGGa -3'
miRNA:   3'- -GCUGgCGGGGUU--UGGCGAGCC----------ACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.