miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 143364 0.72 0.452197
Target:  5'- cCGGCUcuccgucgagagGCCCCAcGugCGCgucCGGUGCGGu -3'
miRNA:   3'- -GCUGG------------CGGGGU-UugGCGa--GCCACGCC- -5'
5233 5' -59.7 NC_001798.1 + 142483 0.67 0.766003
Target:  5'- gGACgGCCCCcgAGGCgGCgcgggGGUGCGa -3'
miRNA:   3'- gCUGgCGGGG--UUUGgCGag---CCACGCc -5'
5233 5' -59.7 NC_001798.1 + 141146 0.66 0.77502
Target:  5'- gGGCCGCCgacaCCAgcGACCGCUCuccgggggaGcGUGCGu -3'
miRNA:   3'- gCUGGCGG----GGU--UUGGCGAG---------C-CACGCc -5'
5233 5' -59.7 NC_001798.1 + 140191 0.67 0.766003
Target:  5'- gGGCCGCCU---GCgGC-CGGUGCuGGu -3'
miRNA:   3'- gCUGGCGGGguuUGgCGaGCCACG-CC- -5'
5233 5' -59.7 NC_001798.1 + 139593 0.67 0.755038
Target:  5'- cCGACCGgCCU--GCCGCUcCGGgaguuuccguucGCGGc -3'
miRNA:   3'- -GCUGGCgGGGuuUGGCGA-GCCa-----------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 139178 0.66 0.787445
Target:  5'- gGACCGgacgacguuguacacCCCCuGACC-CUCGGUGUa- -3'
miRNA:   3'- gCUGGC---------------GGGGuUUGGcGAGCCACGcc -5'
5233 5' -59.7 NC_001798.1 + 137941 0.66 0.77502
Target:  5'- cCGGCCGCCCgGuccGCCGCgCGcUGCu- -3'
miRNA:   3'- -GCUGGCGGGgUu--UGGCGaGCcACGcc -5'
5233 5' -59.7 NC_001798.1 + 137437 0.68 0.669188
Target:  5'- gGAcCCGCCCCGcgggGACgCGCUCGcccggaaaucgGCGGg -3'
miRNA:   3'- gCU-GGCGGGGU----UUG-GCGAGCca---------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 135918 0.67 0.738325
Target:  5'- aCGACCcccuGCCCCAAACgGCcuuccgCGGagGCGc -3'
miRNA:   3'- -GCUGG----CGGGGUUUGgCGa-----GCCa-CGCc -5'
5233 5' -59.7 NC_001798.1 + 135352 0.7 0.563565
Target:  5'- aCGcCUGCCCCGcgcuccggcAGCUGCUCGGcGgGGu -3'
miRNA:   3'- -GCuGGCGGGGU---------UUGGCGAGCCaCgCC- -5'
5233 5' -59.7 NC_001798.1 + 135316 0.66 0.801335
Target:  5'- nGGCCGUgCUGGAgCGCcUGGUGcCGGa -3'
miRNA:   3'- gCUGGCGgGGUUUgGCGaGCCAC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 135288 0.68 0.661364
Target:  5'- gCGGCCGCCCCcucgGAGCC-CUgGGccCGGg -3'
miRNA:   3'- -GCUGGCGGGG----UUUGGcGAgCCacGCC- -5'
5233 5' -59.7 NC_001798.1 + 135061 0.72 0.469984
Target:  5'- cCGGCCGCCuCCugcCCGCcuuUCGGgaaGCGGu -3'
miRNA:   3'- -GCUGGCGG-GGuuuGGCG---AGCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 134916 0.71 0.515922
Target:  5'- cCGGCCGCCgCC--GCCGCcgagUCGGcgcgugaccuggUGCGGg -3'
miRNA:   3'- -GCUGGCGG-GGuuUGGCG----AGCC------------ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 133430 0.69 0.651565
Target:  5'- cCGACgGCCCCuuGCUG-UCGGaggacGCGGu -3'
miRNA:   3'- -GCUGgCGGGGuuUGGCgAGCCa----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 132132 0.72 0.434784
Target:  5'- aGGCgGCCCUgcGCCGC-CGGgggccgGCGGg -3'
miRNA:   3'- gCUGgCGGGGuuUGGCGaGCCa-----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 131778 0.73 0.40941
Target:  5'- aCGACCGCCCCuuccACCGuCUCaucGUGCaGGu -3'
miRNA:   3'- -GCUGGCGGGGuu--UGGC-GAGc--CACG-CC- -5'
5233 5' -59.7 NC_001798.1 + 131553 0.74 0.377052
Target:  5'- gCGAgCGCCCC-GACgGCcCGGUGCGu -3'
miRNA:   3'- -GCUgGCGGGGuUUGgCGaGCCACGCc -5'
5233 5' -59.7 NC_001798.1 + 129253 0.7 0.592719
Target:  5'- cCGACUGCCCCcugcAACCGCaccUGGUGaCGu -3'
miRNA:   3'- -GCUGGCGGGGu---UUGGCGa--GCCAC-GCc -5'
5233 5' -59.7 NC_001798.1 + 129035 0.66 0.809835
Target:  5'- gCGAugcuCCGCCCCGGAUCGggCGcugGUGGa -3'
miRNA:   3'- -GCU----GGCGGGGUUUGGCgaGCca-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.