miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 128425 0.74 0.369237
Target:  5'- aCGACCGCCUCca--CGCUgCGGUGgGGc -3'
miRNA:   3'- -GCUGGCGGGGuuugGCGA-GCCACgCC- -5'
5233 5' -59.7 NC_001798.1 + 127619 0.7 0.582967
Target:  5'- -uGCCGCCCgAGcugagGCCGCUgcUGGUGCuGGu -3'
miRNA:   3'- gcUGGCGGGgUU-----UGGCGA--GCCACG-CC- -5'
5233 5' -59.7 NC_001798.1 + 127252 0.66 0.792694
Target:  5'- -aACCGCCCCcugAAGCaCGacgUCGGgcugGCGGu -3'
miRNA:   3'- gcUGGCGGGG---UUUG-GCg--AGCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 121699 0.66 0.792694
Target:  5'- gGGCCGCggcuCCCGccGCCGCgaCGGagGCGGc -3'
miRNA:   3'- gCUGGCG----GGGUu-UGGCGa-GCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 121288 0.7 0.553927
Target:  5'- gCGGCCGCCCCGA--CGgUgGG-GCGGc -3'
miRNA:   3'- -GCUGGCGGGGUUugGCgAgCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 118608 0.71 0.534805
Target:  5'- ---gCGCCCCGAuGCCGCggcgcugcagCGGUGCGa -3'
miRNA:   3'- gcugGCGGGGUU-UGGCGa---------GCCACGCc -5'
5233 5' -59.7 NC_001798.1 + 116302 0.71 0.50658
Target:  5'- gGACCGCCaCCgAGACUGC-CGGauugacGCGGg -3'
miRNA:   3'- gCUGGCGG-GG-UUUGGCGaGCCa-----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 116097 0.66 0.809835
Target:  5'- gCGACCuCCCCGAggagugcaugGCCGUguaUCGGgaccugGUGGc -3'
miRNA:   3'- -GCUGGcGGGGUU----------UGGCG---AGCCa-----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 113231 0.66 0.78392
Target:  5'- gCGucuuCCGCCCCAcACCcaGC-CGGUcuuuuccaaGCGGg -3'
miRNA:   3'- -GCu---GGCGGGGUuUGG--CGaGCCA---------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 110918 0.66 0.801335
Target:  5'- -aGCCGCCCCc-GCCGgCccgCGGUcaaacGCGGa -3'
miRNA:   3'- gcUGGCGGGGuuUGGC-Ga--GCCA-----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 109672 0.68 0.709881
Target:  5'- aCGGCCGuCCuCCGGgcGCCGUUCcugGCGGg -3'
miRNA:   3'- -GCUGGC-GG-GGUU--UGGCGAGccaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 109367 0.66 0.77502
Target:  5'- uGGCCGCCCggggagCAGcgggcugcgcgGCCGaCUCGGUGUu- -3'
miRNA:   3'- gCUGGCGGG------GUU-----------UGGC-GAGCCACGcc -5'
5233 5' -59.7 NC_001798.1 + 108678 0.66 0.809835
Target:  5'- aCGcGCCGCCCCcgGGGCCGC-Cc--GCGGg -3'
miRNA:   3'- -GC-UGGCGGGG--UUUGGCGaGccaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 108596 0.71 0.486292
Target:  5'- gCGGCCGCgCCGGACCGCgagGGgcuuacguucccGCGGg -3'
miRNA:   3'- -GCUGGCGgGGUUUGGCGag-CCa-----------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 108101 0.66 0.809835
Target:  5'- aCGACCauggGCCCCGGuCUGUgggUGGUGaUGGg -3'
miRNA:   3'- -GCUGG----CGGGGUUuGGCGa--GCCAC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 107444 0.66 0.78392
Target:  5'- gCGACCccgcGCCCCGAccCCGaggaCGGcGCGGg -3'
miRNA:   3'- -GCUGG----CGGGGUUu-GGCga--GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 107283 0.68 0.671142
Target:  5'- cCGACCGCCuggCCAGACgccaaCGCcCGGgcgaGCGGc -3'
miRNA:   3'- -GCUGGCGG---GGUUUG-----GCGaGCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 107187 0.67 0.756876
Target:  5'- uGACC-CCCCAGGCCGUgUUGGcguucGUGGc -3'
miRNA:   3'- gCUGGcGGGGUUUGGCG-AGCCa----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 106099 0.67 0.738325
Target:  5'- gCGACCcgGCgCCGcGACCGC-CGGgucUGCGGu -3'
miRNA:   3'- -GCUGG--CGgGGU-UUGGCGaGCC---ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 105410 0.67 0.719434
Target:  5'- gGGCCGCCgC-GGCCGC--GGUGCGc -3'
miRNA:   3'- gCUGGCGGgGuUUGGCGagCCACGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.