miRNA display CGI


Results 61 - 80 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 104684 0.68 0.676994
Target:  5'- cCGGCCGCCgCGAACUGCgcuUUGGgcagcuugucgucGCGGu -3'
miRNA:   3'- -GCUGGCGGgGUUUGGCG---AGCCa------------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 104594 0.67 0.747647
Target:  5'- aCG-UCGCCCgGGGCCGC-CGGUaGCa- -3'
miRNA:   3'- -GCuGGCGGGgUUUGGCGaGCCA-CGcc -5'
5233 5' -59.7 NC_001798.1 + 102903 0.68 0.676994
Target:  5'- cCGGCCuGCCgCC--GCCGCUCGGccacaaggcuccaGCGGu -3'
miRNA:   3'- -GCUGG-CGG-GGuuUGGCGAGCCa------------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 102531 0.67 0.756876
Target:  5'- -cACCGUCCCcgcggccggcAGGCCGCacgCGGUcaGCGGc -3'
miRNA:   3'- gcUGGCGGGG----------UUUGGCGa--GCCA--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 102208 0.68 0.709881
Target:  5'- gCGGCgCGCCgggagucgaCCGGgcGCgGCUCGGgGCGGg -3'
miRNA:   3'- -GCUG-GCGG---------GGUU--UGgCGAGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 101957 0.67 0.738325
Target:  5'- gGACCGCCCCGGAUagaggagGCccCGGggggGCGa -3'
miRNA:   3'- gCUGGCGGGGUUUGg------CGa-GCCa---CGCc -5'
5233 5' -59.7 NC_001798.1 + 98675 0.67 0.762365
Target:  5'- cCGGCCGCCCCccgucccGAGCCccgcgaccaccaagGCcCGGaaGCGGa -3'
miRNA:   3'- -GCUGGCGGGG-------UUUGG--------------CGaGCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 98601 0.7 0.592719
Target:  5'- cCGGCgGCCCCGGcggccccCCGCgccUCGG-GCGGc -3'
miRNA:   3'- -GCUGgCGGGGUUu------GGCG---AGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 98403 0.7 0.553927
Target:  5'- aCGGCUGCaUCGGAccCCGCUCGGUcGUGGu -3'
miRNA:   3'- -GCUGGCGgGGUUU--GGCGAGCCA-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 97498 0.71 0.534805
Target:  5'- gGGCCgaggaggaagaGCCCCGGGCCGCcgCGGaggaggggggGCGGa -3'
miRNA:   3'- gCUGG-----------CGGGGUUUGGCGa-GCCa---------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 97216 0.72 0.458381
Target:  5'- aGACCGCCgCGguGGCCGUggagcuggcgcuguUCGGgcgGCGGg -3'
miRNA:   3'- gCUGGCGGgGU--UUGGCG--------------AGCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 96970 0.66 0.801335
Target:  5'- -cGCUGgCgCGGACCGCggCGGgcgGCGGg -3'
miRNA:   3'- gcUGGCgGgGUUUGGCGa-GCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 96899 0.68 0.68089
Target:  5'- aCGGuacCUGCCCCAcGCCGC-CGGgcUGuCGGa -3'
miRNA:   3'- -GCU---GGCGGGGUuUGGCGaGCC--AC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 95281 0.66 0.783035
Target:  5'- uGGCCuGCCCCAgggccggguuuguGugCGCggcgucgagucUCGGggGCGGg -3'
miRNA:   3'- gCUGG-CGGGGU-------------UugGCG-----------AGCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 94992 0.7 0.553927
Target:  5'- gCGGCCGCCUgGGccCCGCagggCGGcGCGGg -3'
miRNA:   3'- -GCUGGCGGGgUUu-GGCGa---GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 92026 0.68 0.700267
Target:  5'- -cACCcCCaCCAGggGCCGCUCGGcgaacggGCGGg -3'
miRNA:   3'- gcUGGcGG-GGUU--UGGCGAGCCa------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 91095 0.66 0.78392
Target:  5'- gCGGCCGUCgUGGACC-C-CGGUGCGc -3'
miRNA:   3'- -GCUGGCGGgGUUUGGcGaGCCACGCc -5'
5233 5' -59.7 NC_001798.1 + 90696 0.68 0.690601
Target:  5'- gGGCCGCCgCCAGG-CGCUCGcagagaucgcGCGGg -3'
miRNA:   3'- gCUGGCGG-GGUUUgGCGAGCca--------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 89148 0.69 0.612298
Target:  5'- gCGACgGCCUCGGGCCGCagGGagaGCGu -3'
miRNA:   3'- -GCUGgCGGGGUUUGGCGagCCa--CGCc -5'
5233 5' -59.7 NC_001798.1 + 87872 0.68 0.700267
Target:  5'- aGGCCGCCCCcAGCa----GGUGCGa -3'
miRNA:   3'- gCUGGCGGGGuUUGgcgagCCACGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.