miRNA display CGI


Results 41 - 60 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 92320 0.66 0.904596
Target:  5'- -cGGcGCGCAgCGG-CGACGcggacGUCGCCg -3'
miRNA:   3'- uuCC-UGCGUgGCCgGCUGCu----UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 22340 0.66 0.904596
Target:  5'- -cGGACGCGCgGGCgucggGGCGGG--GCCg -3'
miRNA:   3'- uuCCUGCGUGgCCGg----CUGCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 52523 0.66 0.904596
Target:  5'- -cGGccgcGCGCGCCGuGCUGGCGAcggggcUCAUCc -3'
miRNA:   3'- uuCC----UGCGUGGC-CGGCUGCUu-----AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 102498 0.66 0.904596
Target:  5'- cGGGGACGgGCCGgcGCCGGgGuGUCcguagGCCa -3'
miRNA:   3'- -UUCCUGCgUGGC--CGGCUgCuUAG-----UGG- -5'
5234 3' -56.6 NC_001798.1 + 151218 0.66 0.904596
Target:  5'- cAGGGA-GCGCgGgGCCGuccGCGggUUGCCc -3'
miRNA:   3'- -UUCCUgCGUGgC-CGGC---UGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 54560 0.66 0.898295
Target:  5'- cGGGGucccgagcccUGCGCCGGCCGGCcGGcCACg -3'
miRNA:   3'- uUCCU----------GCGUGGCCGGCUGcUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 37990 0.66 0.898295
Target:  5'- gGGGGAUGCACCGGa-GACGu----CCu -3'
miRNA:   3'- -UUCCUGCGUGGCCggCUGCuuaguGG- -5'
5234 3' -56.6 NC_001798.1 + 21035 0.66 0.891765
Target:  5'- aAGGcGGCGC-CCGGCCuGCGAGaaagCGCg -3'
miRNA:   3'- -UUC-CUGCGuGGCCGGcUGCUUa---GUGg -5'
5234 3' -56.6 NC_001798.1 + 22935 0.66 0.891765
Target:  5'- --cGACGCcgccgccgauGCCGuGCCGACGAGgcgGCCc -3'
miRNA:   3'- uucCUGCG----------UGGC-CGGCUGCUUag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 114938 0.66 0.891765
Target:  5'- gAAGGugGaggaCACCgaGGCCGACGugccGGUgACCu -3'
miRNA:   3'- -UUCCugC----GUGG--CCGGCUGC----UUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 116701 0.66 0.891765
Target:  5'- -cGGGCGCGUCGucGUCGACGGGccCGCCa -3'
miRNA:   3'- uuCCUGCGUGGC--CGGCUGCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 2228 0.66 0.891765
Target:  5'- cGAGGcGCGCAgCgGGCCGaaggcgGCGGGcgCGCCg -3'
miRNA:   3'- -UUCC-UGCGU-GgCCGGC------UGCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 74865 0.66 0.891765
Target:  5'- gGAGGugGgGgCaGuGCCGGUGggUCGCCa -3'
miRNA:   3'- -UUCCugCgUgG-C-CGGCUGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 8833 0.66 0.897652
Target:  5'- -uGGaACGCACCgagucuuGGUCGGCGGgccgggagGUCAUCg -3'
miRNA:   3'- uuCC-UGCGUGG-------CCGGCUGCU--------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 112783 0.66 0.897652
Target:  5'- -cGGACGCACggaugugCGGCUcGCGAAcCACa -3'
miRNA:   3'- uuCCUGCGUG-------GCCGGcUGCUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 49037 0.66 0.898295
Target:  5'- ---uACGcCACCGGUCGGCuGAGUCAggcCCa -3'
miRNA:   3'- uuccUGC-GUGGCCGGCUG-CUUAGU---GG- -5'
5234 3' -56.6 NC_001798.1 + 138271 0.66 0.898295
Target:  5'- uAGGcGCGUACCGuGUCGuuGAuGUCGCCc -3'
miRNA:   3'- uUCC-UGCGUGGC-CGGCugCU-UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 36333 0.66 0.898295
Target:  5'- cGGGGCuCGCUGGuCCGcCGAaguaaagaaaagAUCGCCa -3'
miRNA:   3'- uUCCUGcGUGGCC-GGCuGCU------------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 122237 0.66 0.898295
Target:  5'- uGGGAaGCuCUGGCCGGCGGcg-ACCg -3'
miRNA:   3'- uUCCUgCGuGGCCGGCUGCUuagUGG- -5'
5234 3' -56.6 NC_001798.1 + 6364 0.66 0.898295
Target:  5'- gGGGGACGgGCCggggGGCCGGggggcCGGGggGCCg -3'
miRNA:   3'- -UUCCUGCgUGG----CCGGCU-----GCUUagUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.