miRNA display CGI


Results 81 - 100 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 87289 0.67 0.863448
Target:  5'- -uGGuCGUGCUGGCCGACcgccacagCACCc -3'
miRNA:   3'- uuCCuGCGUGGCCGGCUGcuua----GUGG- -5'
5234 3' -56.6 NC_001798.1 + 73726 0.67 0.863448
Target:  5'- -cGGGCGCGgcacacaugauuCCGGCCG-CGcuaccUCACCc -3'
miRNA:   3'- uuCCUGCGU------------GGCCGGCuGCuu---AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 34848 0.67 0.863448
Target:  5'- -cGGAC-CGCCGGgCGGgGGA-CGCCu -3'
miRNA:   3'- uuCCUGcGUGGCCgGCUgCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 114696 0.67 0.863448
Target:  5'- cAGGGuuGC-CCGGgCGACccuGGUCGCCg -3'
miRNA:   3'- -UUCCugCGuGGCCgGCUGc--UUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 149979 0.67 0.855842
Target:  5'- cGGGGGCGCGgCGcCCG-CGGA-CGCCg -3'
miRNA:   3'- -UUCCUGCGUgGCcGGCuGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 97597 0.67 0.855842
Target:  5'- cAGGGGCGCAggGGCCGgagagcugggGCGAcAUCGCg -3'
miRNA:   3'- -UUCCUGCGUggCCGGC----------UGCU-UAGUGg -5'
5234 3' -56.6 NC_001798.1 + 131278 0.67 0.848037
Target:  5'- --cGACGCAgaUGGCCGAgaCGAugaacGUCGCCa -3'
miRNA:   3'- uucCUGCGUg-GCCGGCU--GCU-----UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 116847 0.67 0.848037
Target:  5'- cGGGGCGCugCacGCCGGCGug-CugCu -3'
miRNA:   3'- uUCCUGCGugGc-CGGCUGCuuaGugG- -5'
5234 3' -56.6 NC_001798.1 + 23580 0.67 0.855071
Target:  5'- gGGGcGGCGCcCCGGCCGAgcccgcccagggcCGAGccCGCCc -3'
miRNA:   3'- -UUC-CUGCGuGGCCGGCU-------------GCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 113623 0.67 0.855842
Target:  5'- uGGGAauCGCcuGCgCGGCCGGCGc--CGCCa -3'
miRNA:   3'- uUCCU--GCG--UG-GCCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 78682 0.67 0.855842
Target:  5'- cAGG-CGCGCuCGG-UGGCGGAgaUCGCCg -3'
miRNA:   3'- uUCCuGCGUG-GCCgGCUGCUU--AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 3834 0.68 0.823494
Target:  5'- -cGGGCGCcCCccagaGGCCGggGCGGcuGUCGCCc -3'
miRNA:   3'- uuCCUGCGuGG-----CCGGC--UGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 12279 0.68 0.823494
Target:  5'- -cGGugGCGCagacccacaGGCCca-GGAUCGCCa -3'
miRNA:   3'- uuCCugCGUGg--------CCGGcugCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 34118 0.68 0.823494
Target:  5'- -uGGGCGUACgGGcCCGACccg-CGCCu -3'
miRNA:   3'- uuCCUGCGUGgCC-GGCUGcuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 57746 0.68 0.823494
Target:  5'- -uGGGCGCGcCCGGCgcagCGAgGAggGUUGCCg -3'
miRNA:   3'- uuCCUGCGU-GGCCG----GCUgCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 108643 0.68 0.823494
Target:  5'- cGGGGCgaccgagagGCACCcggacGGCCGACGcaacgCGCCg -3'
miRNA:   3'- uUCCUG---------CGUGG-----CCGGCUGCuua--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 97656 0.68 0.823494
Target:  5'- cGGGA-GCGCCGGCgGcuguacGCGGAcCGCCu -3'
miRNA:   3'- uUCCUgCGUGGCCGgC------UGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 124434 0.68 0.823494
Target:  5'- -cGGuCGCGCgGGCCGugGccagaGCCu -3'
miRNA:   3'- uuCCuGCGUGgCCGGCugCuuag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 146499 0.68 0.823494
Target:  5'- -cGGGCcggcaacgccccGCGCCGGCCGcgGCGGAgagaACCc -3'
miRNA:   3'- uuCCUG------------CGUGGCCGGC--UGCUUag--UGG- -5'
5234 3' -56.6 NC_001798.1 + 153968 0.68 0.814961
Target:  5'- cGAGGACGCgGCCGGCgCGcucucgaccGCGGuUC-CCg -3'
miRNA:   3'- -UUCCUGCG-UGGCCG-GC---------UGCUuAGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.