miRNA display CGI


Results 101 - 120 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 24562 0.68 0.797412
Target:  5'- -uGGugGCGgCGGCCGGCG---CGCg -3'
miRNA:   3'- uuCCugCGUgGCCGGCUGCuuaGUGg -5'
5234 3' -56.6 NC_001798.1 + 2129 0.68 0.796518
Target:  5'- cAGGuccuCGC-CCGGCagCGGCGAguagaggAUCACCa -3'
miRNA:   3'- uUCCu---GCGuGGCCG--GCUGCU-------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 19989 0.68 0.794727
Target:  5'- -cGGACGCGgauuccggguucucCCGGCCGGCcggGGAggGCCc -3'
miRNA:   3'- uuCCUGCGU--------------GGCCGGCUG---CUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 153684 0.68 0.788412
Target:  5'- cGGGGACGCggggGCCGccGCCGGCGcaggcucagGcgCGCCa -3'
miRNA:   3'- -UUCCUGCG----UGGC--CGGCUGC---------UuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 142171 0.68 0.788412
Target:  5'- cAGGGACGCGCgCGGUucUGACGcggggucgaGcgCGCCa -3'
miRNA:   3'- -UUCCUGCGUG-GCCG--GCUGC---------UuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 2607 0.68 0.806264
Target:  5'- gGGGGGCGCggggcGCCGcCCGGCGg--CGCCc -3'
miRNA:   3'- -UUCCUGCG-----UGGCcGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 28677 0.68 0.806264
Target:  5'- --cGugGCGgCGGCCGAgGcGGUCAUCg -3'
miRNA:   3'- uucCugCGUgGCCGGCUgC-UUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 146499 0.68 0.823494
Target:  5'- -cGGGCcggcaacgccccGCGCCGGCCGcgGCGGAgagaACCc -3'
miRNA:   3'- uuCCUG------------CGUGGCCGGC--UGCUUag--UGG- -5'
5234 3' -56.6 NC_001798.1 + 124434 0.68 0.823494
Target:  5'- -cGGuCGCGCgGGCCGugGccagaGCCu -3'
miRNA:   3'- uuCCuGCGUGgCCGGCugCuuag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 97656 0.68 0.823494
Target:  5'- cGGGA-GCGCCGGCgGcuguacGCGGAcCGCCu -3'
miRNA:   3'- uUCCUgCGUGGCCGgC------UGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 108643 0.68 0.823494
Target:  5'- cGGGGCgaccgagagGCACCcggacGGCCGACGcaacgCGCCg -3'
miRNA:   3'- uUCCUG---------CGUGG-----CCGGCUGCuua--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 57746 0.68 0.823494
Target:  5'- -uGGGCGCGcCCGGCgcagCGAgGAggGUUGCCg -3'
miRNA:   3'- uuCCUGCGU-GGCCG----GCUgCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 34118 0.68 0.823494
Target:  5'- -uGGGCGUACgGGcCCGACccg-CGCCu -3'
miRNA:   3'- uuCCUGCGUGgCC-GGCUGcuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 12279 0.68 0.823494
Target:  5'- -cGGugGCGCagacccacaGGCCca-GGAUCGCCa -3'
miRNA:   3'- uuCCugCGUGg--------CCGGcugCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 3834 0.68 0.823494
Target:  5'- -cGGGCGCcCCccagaGGCCGggGCGGcuGUCGCCc -3'
miRNA:   3'- uuCCUGCGuGG-----CCGGC--UGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153968 0.68 0.814961
Target:  5'- cGAGGACGCgGCCGGCgCGcucucgaccGCGGuUC-CCg -3'
miRNA:   3'- -UUCCUGCG-UGGCCG-GC---------UGCUuAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 66031 0.68 0.814961
Target:  5'- --uGugGCGCauGCCG-CGggUCGCCc -3'
miRNA:   3'- uucCugCGUGgcCGGCuGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 23261 0.68 0.814961
Target:  5'- cGGGGCGUACCcggaccccauGGCCaGCcuGUCGCCg -3'
miRNA:   3'- uUCCUGCGUGG----------CCGGcUGcuUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 84996 0.68 0.812369
Target:  5'- -cGGACGCgugcgccccgcucgACCGGCCauGGCGAcGUcCGCCc -3'
miRNA:   3'- uuCCUGCG--------------UGGCCGG--CUGCU-UA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 62446 0.68 0.806264
Target:  5'- -cGGACGuCGCCggugGGCCGcGCGAcggCGCCc -3'
miRNA:   3'- uuCCUGC-GUGG----CCGGC-UGCUua-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.