miRNA display CGI


Results 121 - 140 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 3834 0.68 0.823494
Target:  5'- -cGGGCGCcCCccagaGGCCGggGCGGcuGUCGCCc -3'
miRNA:   3'- uuCCUGCGuGG-----CCGGC--UGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153968 0.68 0.814961
Target:  5'- cGAGGACGCgGCCGGCgCGcucucgaccGCGGuUC-CCg -3'
miRNA:   3'- -UUCCUGCG-UGGCCG-GC---------UGCUuAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 149934 0.68 0.800971
Target:  5'- gGAGGAgGCGgCGGCgaccgcggccugggaCGACGGAgaCGCCg -3'
miRNA:   3'- -UUCCUgCGUgGCCG---------------GCUGCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 66841 0.68 0.806264
Target:  5'- --cGGCGCccagGCCGGgguuuCCGGgGAGUCGCCg -3'
miRNA:   3'- uucCUGCG----UGGCC-----GGCUgCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 2607 0.68 0.806264
Target:  5'- gGGGGGCGCggggcGCCGcCCGGCGg--CGCCc -3'
miRNA:   3'- -UUCCUGCG-----UGGCcGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 28677 0.68 0.806264
Target:  5'- --cGugGCGgCGGCCGAgGcGGUCAUCg -3'
miRNA:   3'- uucCugCGUgGCCGGCUgC-UUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 62446 0.68 0.806264
Target:  5'- -cGGACGuCGCCggugGGCCGcGCGAcggCGCCc -3'
miRNA:   3'- uuCCUGC-GUGG----CCGGC-UGCUua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 84996 0.68 0.812369
Target:  5'- -cGGACGCgugcgccccgcucgACCGGCCauGGCGAcGUcCGCCc -3'
miRNA:   3'- uuCCUGCG--------------UGGCCGG--CUGCU-UA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 23261 0.68 0.814961
Target:  5'- cGGGGCGUACCcggaccccauGGCCaGCcuGUCGCCg -3'
miRNA:   3'- uUCCUGCGUGG----------CCGGcUGcuUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 66031 0.68 0.814961
Target:  5'- --uGugGCGCauGCCG-CGggUCGCCc -3'
miRNA:   3'- uucCugCGUGgcCGGCuGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 53805 0.69 0.751119
Target:  5'- -uGGAUGCugUGGaCGGCGGacaaguacguguGUCGCCg -3'
miRNA:   3'- uuCCUGCGugGCCgGCUGCU------------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 112413 0.69 0.751119
Target:  5'- -uGGugGCAUagcugagcuccaUGGCCGGCGAGcCACg -3'
miRNA:   3'- uuCCugCGUG------------GCCGGCUGCUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 147044 0.69 0.751119
Target:  5'- cGAGGuGCGCcCCGGCCGGaGGGgcccccgCACCu -3'
miRNA:   3'- -UUCC-UGCGuGGCCGGCUgCUUa------GUGG- -5'
5234 3' -56.6 NC_001798.1 + 99188 0.69 0.759674
Target:  5'- cGGGACGaccacgagACCGacauggagcucaaGCCGGCGAagGUCGCCa -3'
miRNA:   3'- uUCCUGCg-------UGGC-------------CGGCUGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 150845 0.69 0.759674
Target:  5'- aGGGGGCGCcggucgggucgcgGCgGGCUGggagguuccGCGggUCGCCc -3'
miRNA:   3'- -UUCCUGCG-------------UGgCCGGC---------UGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 137169 0.69 0.760619
Target:  5'- cAGGACGCuggucgcgguaaACCgcGGCUGGCG-AUCGCUg -3'
miRNA:   3'- uUCCUGCG------------UGG--CCGGCUGCuUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 124817 0.69 0.760619
Target:  5'- gAAGGACGCGagcgaCaGCgCGAUGAGgggCACCa -3'
miRNA:   3'- -UUCCUGCGUg----GcCG-GCUGCUUa--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 33286 0.69 0.770007
Target:  5'- -uGGGCGgGCUGGCUGGCGggUa--- -3'
miRNA:   3'- uuCCUGCgUGGCCGGCUGCuuAgugg -5'
5234 3' -56.6 NC_001798.1 + 74772 0.69 0.770007
Target:  5'- -cGGACGC-CgCGGCCu-CGggUcCACCg -3'
miRNA:   3'- uuCCUGCGuG-GCCGGcuGCuuA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 47183 0.69 0.751119
Target:  5'- cAGcGgGCACUGGCCGcCGggUCAgCCu -3'
miRNA:   3'- uUCcUgCGUGGCCGGCuGCuuAGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.