miRNA display CGI


Results 141 - 160 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 66362 0.69 0.722035
Target:  5'- cAGGAUGCGauacaGGCgGGCGGAcCGCCg -3'
miRNA:   3'- uUCCUGCGUgg---CCGgCUGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153771 0.69 0.741515
Target:  5'- aGGGGGCGCugCGGCCcGCGcuccuugCGCg -3'
miRNA:   3'- -UUCCUGCGugGCCGGcUGCuua----GUGg -5'
5234 3' -56.6 NC_001798.1 + 94544 0.69 0.750163
Target:  5'- -cGGGCGCgagcGCCaacgcguccgaGGCCGccaaggcGCGggUCGCCa -3'
miRNA:   3'- uuCCUGCG----UGG-----------CCGGC-------UGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 42727 0.69 0.751119
Target:  5'- --cGuCGcCACCGGCCGAgGGcccGUCGCCc -3'
miRNA:   3'- uucCuGC-GUGGCCGGCUgCU---UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 127010 0.69 0.770007
Target:  5'- -cGGACGCGgugucgcuCCGGCCGGCc-GUCcugGCCg -3'
miRNA:   3'- uuCCUGCGU--------GGCCGGCUGcuUAG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 74772 0.69 0.770007
Target:  5'- -cGGACGC-CgCGGCCu-CGggUcCACCg -3'
miRNA:   3'- uuCCUGCGuG-GCCGGcuGCuuA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 33286 0.69 0.770007
Target:  5'- -uGGGCGgGCUGGCUGGCGggUa--- -3'
miRNA:   3'- uuCCUGCgUGGCCGGCUGCuuAgugg -5'
5234 3' -56.6 NC_001798.1 + 124817 0.69 0.760619
Target:  5'- gAAGGACGCGagcgaCaGCgCGAUGAGgggCACCa -3'
miRNA:   3'- -UUCCUGCGUg----GcCG-GCUGCUUa--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 137169 0.69 0.760619
Target:  5'- cAGGACGCuggucgcgguaaACCgcGGCUGGCG-AUCGCUg -3'
miRNA:   3'- uUCCUGCG------------UGG--CCGGCUGCuUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 150845 0.69 0.759674
Target:  5'- aGGGGGCGCcggucgggucgcgGCgGGCUGggagguuccGCGggUCGCCc -3'
miRNA:   3'- -UUCCUGCG-------------UGgCCGGC---------UGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 99188 0.69 0.759674
Target:  5'- cGGGACGaccacgagACCGacauggagcucaaGCCGGCGAagGUCGCCa -3'
miRNA:   3'- uUCCUGCg-------UGGC-------------CGGCUGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 147044 0.69 0.751119
Target:  5'- cGAGGuGCGCcCCGGCCGGaGGGgcccccgCACCu -3'
miRNA:   3'- -UUCC-UGCGuGGCCGGCUgCUUa------GUGG- -5'
5234 3' -56.6 NC_001798.1 + 112413 0.69 0.751119
Target:  5'- -uGGugGCAUagcugagcuccaUGGCCGGCGAGcCACg -3'
miRNA:   3'- uuCCugCGUG------------GCCGGCUGCUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 53805 0.69 0.751119
Target:  5'- -uGGAUGCugUGGaCGGCGGacaaguacguguGUCGCCg -3'
miRNA:   3'- uuCCUGCGugGCCgGCUGCU------------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 47183 0.69 0.751119
Target:  5'- cAGcGgGCACUGGCCGcCGggUCAgCCu -3'
miRNA:   3'- uUCcUgCGUGGCCGGCuGCuuAGU-GG- -5'
5234 3' -56.6 NC_001798.1 + 36110 0.7 0.702251
Target:  5'- gGGGGGgGC-CCGGCUG-CGucUCGCCg -3'
miRNA:   3'- -UUCCUgCGuGGCCGGCuGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 41865 0.7 0.702251
Target:  5'- cAGGGCGC-CgCGGCCGG-GGAUCAgCu -3'
miRNA:   3'- uUCCUGCGuG-GCCGGCUgCUUAGUgG- -5'
5234 3' -56.6 NC_001798.1 + 29380 0.7 0.702251
Target:  5'- cGGGGGCgggcaccacucaGgGCCGcGCCGGCGGggCGCCg -3'
miRNA:   3'- -UUCCUG------------CgUGGC-CGGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 62855 0.7 0.702251
Target:  5'- cAAGGACGUcCUGGCUaaaucuggGACGAGUaGCCg -3'
miRNA:   3'- -UUCCUGCGuGGCCGG--------CUGCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 88754 0.7 0.692268
Target:  5'- cGGGGGCGCgcauGCCGGCCGccucCGGaaaGUCgGCCa -3'
miRNA:   3'- -UUCCUGCG----UGGCCGGCu---GCU---UAG-UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.