miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 3273 0.71 0.631629
Target:  5'- cGGGcaccGCGCGCucguCGGCCGGCGAcgcCGCCg -3'
miRNA:   3'- uUCC----UGCGUG----GCCGGCUGCUua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 149293 0.71 0.621478
Target:  5'- cGGGugGCGCgaccggaGGCCGugGAAguccagcgCGCCc -3'
miRNA:   3'- uUCCugCGUGg------CCGGCugCUUa-------GUGG- -5'
5234 3' -56.6 NC_001798.1 + 98541 0.71 0.662056
Target:  5'- gGGGGcuugauuuGCGCGCUGGUCGugGGggCGCUg -3'
miRNA:   3'- -UUCC--------UGCGUGGCCGGCugCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 69507 0.71 0.611334
Target:  5'- cAGGACGCGCCggagcggggcguGGCCcGCGAGcUCGCg -3'
miRNA:   3'- uUCCUGCGUGG------------CCGGcUGCUU-AGUGg -5'
5234 3' -56.6 NC_001798.1 + 39551 0.71 0.662056
Target:  5'- uGGGugGCGCCggGGCCGucCGuccgCGCCg -3'
miRNA:   3'- uUCCugCGUGG--CCGGCu-GCuua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 47059 0.71 0.651927
Target:  5'- cGGGGACGCGCaauGCCGggGCGAcagCGCCg -3'
miRNA:   3'- -UUCCUGCGUGgc-CGGC--UGCUua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 2506 0.71 0.611334
Target:  5'- cGGGGCGCGgCGGCCGcgGCGGcggcGUCGgCg -3'
miRNA:   3'- uUCCUGCGUgGCCGGC--UGCU----UAGUgG- -5'
5234 3' -56.6 NC_001798.1 + 150448 0.71 0.621478
Target:  5'- -cGGACGCGCgGGgCGACGGccgCGCg -3'
miRNA:   3'- uuCCUGCGUGgCCgGCUGCUua-GUGg -5'
5234 3' -56.6 NC_001798.1 + 32880 0.7 0.692268
Target:  5'- -cGGAC-CACCGGCCGAgG---CGCCu -3'
miRNA:   3'- uuCCUGcGUGGCCGGCUgCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 52491 0.7 0.692268
Target:  5'- cGGGGACGCgcGCCGGCgcaggGACGAcgCGgCg -3'
miRNA:   3'- -UUCCUGCG--UGGCCGg----CUGCUuaGUgG- -5'
5234 3' -56.6 NC_001798.1 + 2473 0.7 0.692268
Target:  5'- cGGGGCcCucgGCgGGCCGGCGggUCAgCg -3'
miRNA:   3'- uUCCUGcG---UGgCCGGCUGCuuAGUgG- -5'
5234 3' -56.6 NC_001798.1 + 3142 0.7 0.672161
Target:  5'- ---cGCGCGCCGGCCGcCGc--CACCa -3'
miRNA:   3'- uuccUGCGUGGCCGGCuGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 109700 0.7 0.682235
Target:  5'- -cGGGCGCGCCcucGGCCGagcaGCGGGaacgCGCCc -3'
miRNA:   3'- uuCCUGCGUGG---CCGGC----UGCUUa---GUGG- -5'
5234 3' -56.6 NC_001798.1 + 62855 0.7 0.702251
Target:  5'- cAAGGACGUcCUGGCUaaaucuggGACGAGUaGCCg -3'
miRNA:   3'- -UUCCUGCGuGGCCGG--------CUGCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 29380 0.7 0.702251
Target:  5'- cGGGGGCgggcaccacucaGgGCCGcGCCGGCGGggCGCCg -3'
miRNA:   3'- -UUCCUG------------CgUGGC-CGGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153175 0.7 0.672161
Target:  5'- cGGGGCucCGCCGGCCGAgGccgcccUCGCCg -3'
miRNA:   3'- uUCCUGc-GUGGCCGGCUgCuu----AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 91079 0.7 0.672161
Target:  5'- uAGGGGCGCGCCGGa-GGCGGccGUCguggACCc -3'
miRNA:   3'- -UUCCUGCGUGGCCggCUGCU--UAG----UGG- -5'
5234 3' -56.6 NC_001798.1 + 109915 0.7 0.682235
Target:  5'- -uGGACGCGCUGGCC-AUGGc-CACCc -3'
miRNA:   3'- uuCCUGCGUGGCCGGcUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 71647 0.7 0.682235
Target:  5'- -uGGGCcCgGCCGuGCCGACGGAaCACCu -3'
miRNA:   3'- uuCCUGcG-UGGC-CGGCUGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 143297 0.7 0.672161
Target:  5'- uAGGGGC-CGuCCGcccCCGGCGggUCGCCg -3'
miRNA:   3'- -UUCCUGcGU-GGCc--GGCUGCuuAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.