miRNA display CGI


Results 81 - 100 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 80263 0.69 0.731818
Target:  5'- -cGGcACGCgGCUGGCCGACugg-CGCCg -3'
miRNA:   3'- uuCC-UGCG-UGGCCGGCUGcuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153771 0.69 0.741515
Target:  5'- aGGGGGCGCugCGGCCcGCGcuccuugCGCg -3'
miRNA:   3'- -UUCCUGCGugGCCGGcUGCuua----GUGg -5'
5234 3' -56.6 NC_001798.1 + 88840 0.69 0.731818
Target:  5'- cGAGGA-GCAUcucgCGGCCGAUGGucGUCACg -3'
miRNA:   3'- -UUCCUgCGUG----GCCGGCUGCU--UAGUGg -5'
5234 3' -56.6 NC_001798.1 + 24826 0.69 0.740549
Target:  5'- cGGGGACcuGCGCgUGGCCGGCGGcagcgaggccgccGUgGCCg -3'
miRNA:   3'- -UUCCUG--CGUG-GCCGGCUGCU-------------UAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 94544 0.69 0.750163
Target:  5'- -cGGGCGCgagcGCCaacgcguccgaGGCCGccaaggcGCGggUCGCCa -3'
miRNA:   3'- uuCCUGCG----UGG-----------CCGGC-------UGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 47183 0.69 0.751119
Target:  5'- cAGcGgGCACUGGCCGcCGggUCAgCCu -3'
miRNA:   3'- uUCcUgCGUGGCCGGCuGCuuAGU-GG- -5'
5234 3' -56.6 NC_001798.1 + 74772 0.69 0.770007
Target:  5'- -cGGACGC-CgCGGCCu-CGggUcCACCg -3'
miRNA:   3'- uuCCUGCGuG-GCCGGcuGCuuA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 124817 0.69 0.760619
Target:  5'- gAAGGACGCGagcgaCaGCgCGAUGAGgggCACCa -3'
miRNA:   3'- -UUCCUGCGUg----GcCG-GCUGCUUa--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 137169 0.69 0.760619
Target:  5'- cAGGACGCuggucgcgguaaACCgcGGCUGGCG-AUCGCUg -3'
miRNA:   3'- uUCCUGCG------------UGG--CCGGCUGCuUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 53805 0.69 0.751119
Target:  5'- -uGGAUGCugUGGaCGGCGGacaaguacguguGUCGCCg -3'
miRNA:   3'- uuCCUGCGugGCCgGCUGCU------------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 12279 0.68 0.823494
Target:  5'- -cGGugGCGCagacccacaGGCCca-GGAUCGCCa -3'
miRNA:   3'- uuCCugCGUGg--------CCGGcugCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 3834 0.68 0.823494
Target:  5'- -cGGGCGCcCCccagaGGCCGggGCGGcuGUCGCCc -3'
miRNA:   3'- uuCCUGCGuGG-----CCGGC--UGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 34118 0.68 0.823494
Target:  5'- -uGGGCGUACgGGcCCGACccg-CGCCu -3'
miRNA:   3'- uuCCUGCGUGgCC-GGCUGcuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 57746 0.68 0.823494
Target:  5'- -uGGGCGCGcCCGGCgcagCGAgGAggGUUGCCg -3'
miRNA:   3'- uuCCUGCGU-GGCCG----GCUgCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 108643 0.68 0.823494
Target:  5'- cGGGGCgaccgagagGCACCcggacGGCCGACGcaacgCGCCg -3'
miRNA:   3'- uUCCUG---------CGUGG-----CCGGCUGCuua--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 97656 0.68 0.823494
Target:  5'- cGGGA-GCGCCGGCgGcuguacGCGGAcCGCCu -3'
miRNA:   3'- uUCCUgCGUGGCCGgC------UGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 124434 0.68 0.823494
Target:  5'- -cGGuCGCGCgGGCCGugGccagaGCCu -3'
miRNA:   3'- uuCCuGCGUGgCCGGCugCuuag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 146499 0.68 0.823494
Target:  5'- -cGGGCcggcaacgccccGCGCCGGCCGcgGCGGAgagaACCc -3'
miRNA:   3'- uuCCUG------------CGUGGCCGGC--UGCUUag--UGG- -5'
5234 3' -56.6 NC_001798.1 + 150346 0.68 0.778354
Target:  5'- cGGGGCGCgcggugcgcguccACCGGCaCGGCGGGcggCGCg -3'
miRNA:   3'- uUCCUGCG-------------UGGCCG-GCUGCUUa--GUGg -5'
5234 3' -56.6 NC_001798.1 + 79057 0.68 0.778354
Target:  5'- cGGGGCuGCgggcccaGCCGGCCuACGAG-CGCCu -3'
miRNA:   3'- uUCCUG-CG-------UGGCCGGcUGCUUaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.