miRNA display CGI


Results 121 - 140 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 3834 0.68 0.823494
Target:  5'- -cGGGCGCcCCccagaGGCCGggGCGGcuGUCGCCc -3'
miRNA:   3'- uuCCUGCGuGG-----CCGGC--UGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153968 0.68 0.814961
Target:  5'- cGAGGACGCgGCCGGCgCGcucucgaccGCGGuUC-CCg -3'
miRNA:   3'- -UUCCUGCG-UGGCCG-GC---------UGCUuAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 66031 0.68 0.814961
Target:  5'- --uGugGCGCauGCCG-CGggUCGCCc -3'
miRNA:   3'- uucCugCGUGgcCGGCuGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 23261 0.68 0.814961
Target:  5'- cGGGGCGUACCcggaccccauGGCCaGCcuGUCGCCg -3'
miRNA:   3'- uUCCUGCGUGG----------CCGGcUGcuUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 84996 0.68 0.812369
Target:  5'- -cGGACGCgugcgccccgcucgACCGGCCauGGCGAcGUcCGCCc -3'
miRNA:   3'- uuCCUGCG--------------UGGCCGG--CUGCU-UA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 62446 0.68 0.806264
Target:  5'- -cGGACGuCGCCggugGGCCGcGCGAcggCGCCc -3'
miRNA:   3'- uuCCUGC-GUGG----CCGGC-UGCUua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 28677 0.68 0.806264
Target:  5'- --cGugGCGgCGGCCGAgGcGGUCAUCg -3'
miRNA:   3'- uucCugCGUgGCCGGCUgC-UUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 149934 0.68 0.800971
Target:  5'- gGAGGAgGCGgCGGCgaccgcggccugggaCGACGGAgaCGCCg -3'
miRNA:   3'- -UUCCUgCGUgGCCG---------------GCUGCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 66841 0.68 0.806264
Target:  5'- --cGGCGCccagGCCGGgguuuCCGGgGAGUCGCCg -3'
miRNA:   3'- uucCUGCG----UGGCC-----GGCUgCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 19492 0.67 0.84004
Target:  5'- -cGGGCcccCGCUGGCCGuuggcgACGAGUgGCCu -3'
miRNA:   3'- uuCCUGc--GUGGCCGGC------UGCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 55995 0.67 0.84004
Target:  5'- cGGGGGCGagggGCUGGuaGGCGggUC-CCg -3'
miRNA:   3'- -UUCCUGCg---UGGCCggCUGCuuAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 71424 0.67 0.84004
Target:  5'- -cGGACGCcccCCGGCC-ACGGGcUCAgCg -3'
miRNA:   3'- uuCCUGCGu--GGCCGGcUGCUU-AGUgG- -5'
5234 3' -56.6 NC_001798.1 + 135274 0.67 0.84004
Target:  5'- -uGGACGCGCUGG-UGGCGGc-CGCCc -3'
miRNA:   3'- uuCCUGCGUGGCCgGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 57160 0.67 0.831856
Target:  5'- -cGGGCugGCGCCcgGGCCGGCGcccuccgcccaGAUCACg -3'
miRNA:   3'- uuCCUG--CGUGG--CCGGCUGC-----------UUAGUGg -5'
5234 3' -56.6 NC_001798.1 + 28782 0.67 0.831856
Target:  5'- gGAGGAgGCGgCGG-CGGCGGcgCGCg -3'
miRNA:   3'- -UUCCUgCGUgGCCgGCUGCUuaGUGg -5'
5234 3' -56.6 NC_001798.1 + 28384 0.67 0.831856
Target:  5'- -cGGACGCGCCGcGCgGGaaGGUaCGCCu -3'
miRNA:   3'- uuCCUGCGUGGC-CGgCUgcUUA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 153041 0.67 0.831856
Target:  5'- cGGcGGCGCGCgguUGGCCGGCGc--CGCCc -3'
miRNA:   3'- uUC-CUGCGUG---GCCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 87915 0.67 0.831856
Target:  5'- -cGGaACGCcCCGGgCGAUGGcgUACCc -3'
miRNA:   3'- uuCC-UGCGuGGCCgGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 47862 0.67 0.831028
Target:  5'- cGGGGGCcccguggGCGCCGGCgGGCGc-UCGCa -3'
miRNA:   3'- -UUCCUG-------CGUGGCCGgCUGCuuAGUGg -5'
5234 3' -56.6 NC_001798.1 + 61891 0.67 0.831856
Target:  5'- -cGGGCGCGCCcucgaaGCCGGCccugCGCCu -3'
miRNA:   3'- uuCCUGCGUGGc-----CGGCUGcuuaGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.