miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 62855 0.7 0.702251
Target:  5'- cAAGGACGUcCUGGCUaaaucuggGACGAGUaGCCg -3'
miRNA:   3'- -UUCCUGCGuGGCCGG--------CUGCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 29380 0.7 0.702251
Target:  5'- cGGGGGCgggcaccacucaGgGCCGcGCCGGCGGggCGCCg -3'
miRNA:   3'- -UUCCUG------------CgUGGC-CGGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 41865 0.7 0.702251
Target:  5'- cAGGGCGC-CgCGGCCGG-GGAUCAgCu -3'
miRNA:   3'- uUCCUGCGuG-GCCGGCUgCUUAGUgG- -5'
5234 3' -56.6 NC_001798.1 + 36110 0.7 0.702251
Target:  5'- gGGGGGgGC-CCGGCUG-CGucUCGCCg -3'
miRNA:   3'- -UUCCUgCGuGGCCGGCuGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 4367 0.7 0.712177
Target:  5'- gGGGGGCGCGCCGG-CGGCGGu----- -3'
miRNA:   3'- -UUCCUGCGUGGCCgGCUGCUuagugg -5'
5234 3' -56.6 NC_001798.1 + 78639 0.69 0.722035
Target:  5'- gAAGGugGuCGCCGucCCGGCGAccGUgGCCa -3'
miRNA:   3'- -UUCCugC-GUGGCc-GGCUGCU--UAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 134482 0.69 0.722035
Target:  5'- -uGGGCGCGCCuGGCCGccauucGCGAca-GCCc -3'
miRNA:   3'- uuCCUGCGUGG-CCGGC------UGCUuagUGG- -5'
5234 3' -56.6 NC_001798.1 + 66362 0.69 0.722035
Target:  5'- cAGGAUGCGauacaGGCgGGCGGAcCGCCg -3'
miRNA:   3'- uUCCUGCGUgg---CCGgCUGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 5927 0.69 0.730843
Target:  5'- gGGGGcgggccguuccucGCGCACauaaagGGCCGGCGucccGGUCGCCg -3'
miRNA:   3'- -UUCC-------------UGCGUGg-----CCGGCUGC----UUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 80619 0.69 0.731818
Target:  5'- -uGGcCGUGCUGGCCGccGCGAccCACCg -3'
miRNA:   3'- uuCCuGCGUGGCCGGC--UGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 80263 0.69 0.731818
Target:  5'- -cGGcACGCgGCUGGCCGACugg-CGCCg -3'
miRNA:   3'- uuCC-UGCG-UGGCCGGCUGcuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 88840 0.69 0.731818
Target:  5'- cGAGGA-GCAUcucgCGGCCGAUGGucGUCACg -3'
miRNA:   3'- -UUCCUgCGUG----GCCGGCUGCU--UAGUGg -5'
5234 3' -56.6 NC_001798.1 + 76622 0.69 0.731818
Target:  5'- cGAGGccACGCGCaUGGCCGAaGAcgCGCUg -3'
miRNA:   3'- -UUCC--UGCGUG-GCCGGCUgCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 24826 0.69 0.740549
Target:  5'- cGGGGACcuGCGCgUGGCCGGCGGcagcgaggccgccGUgGCCg -3'
miRNA:   3'- -UUCCUG--CGUG-GCCGGCUGCU-------------UAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 97312 0.69 0.741515
Target:  5'- -uGGACGCccugaucaucGgCGGCCaGGCGAcGUCGCCc -3'
miRNA:   3'- uuCCUGCG----------UgGCCGG-CUGCU-UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 83331 0.69 0.741515
Target:  5'- cGAGGGcCGCAgccauUCGGCCG-CGGcGUCGCCc -3'
miRNA:   3'- -UUCCU-GCGU-----GGCCGGCuGCU-UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153771 0.69 0.741515
Target:  5'- aGGGGGCGCugCGGCCcGCGcuccuugCGCg -3'
miRNA:   3'- -UUCCUGCGugGCCGGcUGCuua----GUGg -5'
5234 3' -56.6 NC_001798.1 + 94544 0.69 0.750163
Target:  5'- -cGGGCGCgagcGCCaacgcguccgaGGCCGccaaggcGCGggUCGCCa -3'
miRNA:   3'- uuCCUGCG----UGG-----------CCGGC-------UGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 42727 0.69 0.751119
Target:  5'- --cGuCGcCACCGGCCGAgGGcccGUCGCCc -3'
miRNA:   3'- uucCuGC-GUGGCCGGCUgCU---UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 47183 0.69 0.751119
Target:  5'- cAGcGgGCACUGGCCGcCGggUCAgCCu -3'
miRNA:   3'- uUCcUgCGUGGCCGGCuGCuuAGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.