miRNA display CGI


Results 81 - 100 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 47183 0.69 0.751119
Target:  5'- cAGcGgGCACUGGCCGcCGggUCAgCCu -3'
miRNA:   3'- uUCcUgCGUGGCCGGCuGCuuAGU-GG- -5'
5234 3' -56.6 NC_001798.1 + 42727 0.69 0.751119
Target:  5'- --cGuCGcCACCGGCCGAgGGcccGUCGCCc -3'
miRNA:   3'- uucCuGC-GUGGCCGGCUgCU---UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 53805 0.69 0.751119
Target:  5'- -uGGAUGCugUGGaCGGCGGacaaguacguguGUCGCCg -3'
miRNA:   3'- uuCCUGCGugGCCgGCUGCU------------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 150845 0.69 0.759674
Target:  5'- aGGGGGCGCcggucgggucgcgGCgGGCUGggagguuccGCGggUCGCCc -3'
miRNA:   3'- -UUCCUGCG-------------UGgCCGGC---------UGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 99188 0.69 0.759674
Target:  5'- cGGGACGaccacgagACCGacauggagcucaaGCCGGCGAagGUCGCCa -3'
miRNA:   3'- uUCCUGCg-------UGGC-------------CGGCUGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 137169 0.69 0.760619
Target:  5'- cAGGACGCuggucgcgguaaACCgcGGCUGGCG-AUCGCUg -3'
miRNA:   3'- uUCCUGCG------------UGG--CCGGCUGCuUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 124817 0.69 0.760619
Target:  5'- gAAGGACGCGagcgaCaGCgCGAUGAGgggCACCa -3'
miRNA:   3'- -UUCCUGCGUg----GcCG-GCUGCUUa--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 74772 0.69 0.770007
Target:  5'- -cGGACGC-CgCGGCCu-CGggUcCACCg -3'
miRNA:   3'- uuCCUGCGuG-GCCGGcuGCuuA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 33286 0.69 0.770007
Target:  5'- -uGGGCGgGCUGGCUGGCGggUa--- -3'
miRNA:   3'- uuCCUGCgUGGCCGGCUGCuuAgugg -5'
5234 3' -56.6 NC_001798.1 + 127010 0.69 0.770007
Target:  5'- -cGGACGCGgugucgcuCCGGCCGGCc-GUCcugGCCg -3'
miRNA:   3'- uuCCUGCGU--------GGCCGGCUGcuUAG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 150346 0.68 0.778354
Target:  5'- cGGGGCGCgcggugcgcguccACCGGCaCGGCGGGcggCGCg -3'
miRNA:   3'- uUCCUGCG-------------UGGCCG-GCUGCUUa--GUGg -5'
5234 3' -56.6 NC_001798.1 + 79057 0.68 0.778354
Target:  5'- cGGGGCuGCgggcccaGCCGGCCuACGAG-CGCCu -3'
miRNA:   3'- uUCCUG-CG-------UGGCCGGcUGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 74397 0.68 0.779275
Target:  5'- cGGGGGCcgugGCGCCGGCgGACcuGAcCGCCg -3'
miRNA:   3'- -UUCCUG----CGUGGCCGgCUGc-UUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 109112 0.68 0.779275
Target:  5'- -uGGACGC-CCu-CCGGCGggUgGCCg -3'
miRNA:   3'- uuCCUGCGuGGccGGCUGCuuAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 58900 0.68 0.779275
Target:  5'- gGAGG-CGCGCCGGCCucccCGAGgcuCCa -3'
miRNA:   3'- -UUCCuGCGUGGCCGGcu--GCUUaguGG- -5'
5234 3' -56.6 NC_001798.1 + 2964 0.68 0.779275
Target:  5'- cGGGGCGCGUCGGCgugCGGCGGGgcgGCCg -3'
miRNA:   3'- uUCCUGCGUGGCCG---GCUGCUUag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 140190 0.68 0.787505
Target:  5'- cGGGcCGcCugCGGCCggugcuggugugcGugGggUCGCCg -3'
miRNA:   3'- uUCCuGC-GugGCCGG-------------CugCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153684 0.68 0.788412
Target:  5'- cGGGGACGCggggGCCGccGCCGGCGcaggcucagGcgCGCCa -3'
miRNA:   3'- -UUCCUGCG----UGGC--CGGCUGC---------UuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 120626 0.68 0.788412
Target:  5'- uAGGACGgGCCGGUCG-----UCGCCg -3'
miRNA:   3'- uUCCUGCgUGGCCGGCugcuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 42688 0.68 0.788412
Target:  5'- cGGGAC-CACCGGCguCGGgGAaccaguccccGUCGCCg -3'
miRNA:   3'- uUCCUGcGUGGCCG--GCUgCU----------UAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.