miRNA display CGI


Results 101 - 120 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 42688 0.68 0.788412
Target:  5'- cGGGAC-CACCGGCguCGGgGAaccaguccccGUCGCCg -3'
miRNA:   3'- uUCCUGcGUGGCCG--GCUgCU----------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 19989 0.68 0.794727
Target:  5'- -cGGACGCGgauuccggguucucCCGGCCGGCcggGGAggGCCc -3'
miRNA:   3'- uuCCUGCGU--------------GGCCGGCUG---CUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 2129 0.68 0.796518
Target:  5'- cAGGuccuCGC-CCGGCagCGGCGAguagaggAUCACCa -3'
miRNA:   3'- uUCCu---GCGuGGCCG--GCUGCU-------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 86113 0.68 0.797412
Target:  5'- -cGGACGCccGCCGcGCCGcggucaGCGAGUC-CUg -3'
miRNA:   3'- uuCCUGCG--UGGC-CGGC------UGCUUAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 132668 0.68 0.797412
Target:  5'- aAAGGGCGCugCGacgcgucgcacGCCGACGcggCGCa -3'
miRNA:   3'- -UUCCUGCGugGC-----------CGGCUGCuuaGUGg -5'
5234 3' -56.6 NC_001798.1 + 121798 0.68 0.797412
Target:  5'- cGGGGcCGgGCCGGCCGuuGucggCACCc -3'
miRNA:   3'- -UUCCuGCgUGGCCGGCugCuua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 87983 0.68 0.797412
Target:  5'- -uGGACGCGCCucCCGGgGggUCGgCa -3'
miRNA:   3'- uuCCUGCGUGGccGGCUgCuuAGUgG- -5'
5234 3' -56.6 NC_001798.1 + 78131 0.68 0.797412
Target:  5'- uGGGGCGC-CUGGCgGACGAcAUgACg -3'
miRNA:   3'- uUCCUGCGuGGCCGgCUGCU-UAgUGg -5'
5234 3' -56.6 NC_001798.1 + 48779 0.68 0.797412
Target:  5'- cGGGGACGCACgGcacccCCGGCGAuUC-CCu -3'
miRNA:   3'- -UUCCUGCGUGgCc----GGCUGCUuAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 24562 0.68 0.797412
Target:  5'- -uGGugGCGgCGGCCGGCG---CGCg -3'
miRNA:   3'- uuCCugCGUgGCCGGCUGCuuaGUGg -5'
5234 3' -56.6 NC_001798.1 + 30908 0.68 0.797412
Target:  5'- cGAGGACGaugACCuGGCCGACGGugagggCGgCg -3'
miRNA:   3'- -UUCCUGCg--UGG-CCGGCUGCUua----GUgG- -5'
5234 3' -56.6 NC_001798.1 + 149934 0.68 0.800971
Target:  5'- gGAGGAgGCGgCGGCgaccgcggccugggaCGACGGAgaCGCCg -3'
miRNA:   3'- -UUCCUgCGUgGCCG---------------GCUGCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 66841 0.68 0.806264
Target:  5'- --cGGCGCccagGCCGGgguuuCCGGgGAGUCGCCg -3'
miRNA:   3'- uucCUGCG----UGGCC-----GGCUgCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 2607 0.68 0.806264
Target:  5'- gGGGGGCGCggggcGCCGcCCGGCGg--CGCCc -3'
miRNA:   3'- -UUCCUGCG-----UGGCcGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 62446 0.68 0.806264
Target:  5'- -cGGACGuCGCCggugGGCCGcGCGAcggCGCCc -3'
miRNA:   3'- uuCCUGC-GUGG----CCGGC-UGCUua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 28677 0.68 0.806264
Target:  5'- --cGugGCGgCGGCCGAgGcGGUCAUCg -3'
miRNA:   3'- uucCugCGUgGCCGGCUgC-UUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 84996 0.68 0.812369
Target:  5'- -cGGACGCgugcgccccgcucgACCGGCCauGGCGAcGUcCGCCc -3'
miRNA:   3'- uuCCUGCG--------------UGGCCGG--CUGCU-UA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 23261 0.68 0.814961
Target:  5'- cGGGGCGUACCcggaccccauGGCCaGCcuGUCGCCg -3'
miRNA:   3'- uUCCUGCGUGG----------CCGGcUGcuUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 66031 0.68 0.814961
Target:  5'- --uGugGCGCauGCCG-CGggUCGCCc -3'
miRNA:   3'- uucCugCGUGgcCGGCuGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153968 0.68 0.814961
Target:  5'- cGAGGACGCgGCCGGCgCGcucucgaccGCGGuUC-CCg -3'
miRNA:   3'- -UUCCUGCG-UGGCCG-GC---------UGCUuAGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.