miRNA display CGI


Results 81 - 100 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 19492 0.67 0.84004
Target:  5'- -cGGGCcccCGCUGGCCGuuggcgACGAGUgGCCu -3'
miRNA:   3'- uuCCUGc--GUGGCCGGC------UGCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 55995 0.67 0.84004
Target:  5'- cGGGGGCGagggGCUGGuaGGCGggUC-CCg -3'
miRNA:   3'- -UUCCUGCg---UGGCCggCUGCuuAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 71424 0.67 0.84004
Target:  5'- -cGGACGCcccCCGGCC-ACGGGcUCAgCg -3'
miRNA:   3'- uuCCUGCGu--GGCCGGcUGCUU-AGUgG- -5'
5234 3' -56.6 NC_001798.1 + 135274 0.67 0.84004
Target:  5'- -uGGACGCGCUGG-UGGCGGc-CGCCc -3'
miRNA:   3'- uuCCUGCGUGGCCgGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 87915 0.67 0.831856
Target:  5'- -cGGaACGCcCCGGgCGAUGGcgUACCc -3'
miRNA:   3'- uuCC-UGCGuGGCCgGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153041 0.67 0.831856
Target:  5'- cGGcGGCGCGCgguUGGCCGGCGc--CGCCc -3'
miRNA:   3'- uUC-CUGCGUG---GCCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 28384 0.67 0.831856
Target:  5'- -cGGACGCGCCGcGCgGGaaGGUaCGCCu -3'
miRNA:   3'- uuCCUGCGUGGC-CGgCUgcUUA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 28782 0.67 0.831856
Target:  5'- gGAGGAgGCGgCGG-CGGCGGcgCGCg -3'
miRNA:   3'- -UUCCUgCGUgGCCgGCUGCUuaGUGg -5'
5234 3' -56.6 NC_001798.1 + 57160 0.67 0.831856
Target:  5'- -cGGGCugGCGCCcgGGCCGGCGcccuccgcccaGAUCACg -3'
miRNA:   3'- uuCCUG--CGUGG--CCGGCUGC-----------UUAGUGg -5'
5234 3' -56.6 NC_001798.1 + 61891 0.67 0.831856
Target:  5'- -cGGGCGCGCCcucgaaGCCGGCccugCGCCu -3'
miRNA:   3'- uuCCUGCGUGGc-----CGGCUGcuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 47862 0.67 0.831028
Target:  5'- cGGGGGCcccguggGCGCCGGCgGGCGc-UCGCa -3'
miRNA:   3'- -UUCCUG-------CGUGGCCGgCUGCuuAGUGg -5'
5234 3' -56.6 NC_001798.1 + 3834 0.68 0.823494
Target:  5'- -cGGGCGCcCCccagaGGCCGggGCGGcuGUCGCCc -3'
miRNA:   3'- uuCCUGCGuGG-----CCGGC--UGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 12279 0.68 0.823494
Target:  5'- -cGGugGCGCagacccacaGGCCca-GGAUCGCCa -3'
miRNA:   3'- uuCCugCGUGg--------CCGGcugCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 34118 0.68 0.823494
Target:  5'- -uGGGCGUACgGGcCCGACccg-CGCCu -3'
miRNA:   3'- uuCCUGCGUGgCC-GGCUGcuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 57746 0.68 0.823494
Target:  5'- -uGGGCGCGcCCGGCgcagCGAgGAggGUUGCCg -3'
miRNA:   3'- uuCCUGCGU-GGCCG----GCUgCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 108643 0.68 0.823494
Target:  5'- cGGGGCgaccgagagGCACCcggacGGCCGACGcaacgCGCCg -3'
miRNA:   3'- uUCCUG---------CGUGG-----CCGGCUGCuua--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 97656 0.68 0.823494
Target:  5'- cGGGA-GCGCCGGCgGcuguacGCGGAcCGCCu -3'
miRNA:   3'- uUCCUgCGUGGCCGgC------UGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 124434 0.68 0.823494
Target:  5'- -cGGuCGCGCgGGCCGugGccagaGCCu -3'
miRNA:   3'- uuCCuGCGUGgCCGGCugCuuag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 146499 0.68 0.823494
Target:  5'- -cGGGCcggcaacgccccGCGCCGGCCGcgGCGGAgagaACCc -3'
miRNA:   3'- uuCCUG------------CGUGGCCGGC--UGCUUag--UGG- -5'
5234 3' -56.6 NC_001798.1 + 70310 0.68 0.823494
Target:  5'- -cGGGCGCGgcggUCGGcCCGGCGGAggCGCg -3'
miRNA:   3'- uuCCUGCGU----GGCC-GGCUGCUUa-GUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.