Results 101 - 120 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 23261 | 0.68 | 0.814961 |
Target: 5'- cGGGGCGUACCcggaccccauGGCCaGCcuGUCGCCg -3' miRNA: 3'- uUCCUGCGUGG----------CCGGcUGcuUAGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 66031 | 0.68 | 0.814961 |
Target: 5'- --uGugGCGCauGCCG-CGggUCGCCc -3' miRNA: 3'- uucCugCGUGgcCGGCuGCuuAGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 153968 | 0.68 | 0.814961 |
Target: 5'- cGAGGACGCgGCCGGCgCGcucucgaccGCGGuUC-CCg -3' miRNA: 3'- -UUCCUGCG-UGGCCG-GC---------UGCUuAGuGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 84996 | 0.68 | 0.812369 |
Target: 5'- -cGGACGCgugcgccccgcucgACCGGCCauGGCGAcGUcCGCCc -3' miRNA: 3'- uuCCUGCG--------------UGGCCGG--CUGCU-UA-GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 66841 | 0.68 | 0.806264 |
Target: 5'- --cGGCGCccagGCCGGgguuuCCGGgGAGUCGCCg -3' miRNA: 3'- uucCUGCG----UGGCC-----GGCUgCUUAGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 2607 | 0.68 | 0.806264 |
Target: 5'- gGGGGGCGCggggcGCCGcCCGGCGg--CGCCc -3' miRNA: 3'- -UUCCUGCG-----UGGCcGGCUGCuuaGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 28677 | 0.68 | 0.806264 |
Target: 5'- --cGugGCGgCGGCCGAgGcGGUCAUCg -3' miRNA: 3'- uucCugCGUgGCCGGCUgC-UUAGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 62446 | 0.68 | 0.806264 |
Target: 5'- -cGGACGuCGCCggugGGCCGcGCGAcggCGCCc -3' miRNA: 3'- uuCCUGC-GUGG----CCGGC-UGCUua-GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 149934 | 0.68 | 0.800971 |
Target: 5'- gGAGGAgGCGgCGGCgaccgcggccugggaCGACGGAgaCGCCg -3' miRNA: 3'- -UUCCUgCGUgGCCG---------------GCUGCUUa-GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 24562 | 0.68 | 0.797412 |
Target: 5'- -uGGugGCGgCGGCCGGCG---CGCg -3' miRNA: 3'- uuCCugCGUgGCCGGCUGCuuaGUGg -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 48779 | 0.68 | 0.797412 |
Target: 5'- cGGGGACGCACgGcacccCCGGCGAuUC-CCu -3' miRNA: 3'- -UUCCUGCGUGgCc----GGCUGCUuAGuGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 78131 | 0.68 | 0.797412 |
Target: 5'- uGGGGCGC-CUGGCgGACGAcAUgACg -3' miRNA: 3'- uUCCUGCGuGGCCGgCUGCU-UAgUGg -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 87983 | 0.68 | 0.797412 |
Target: 5'- -uGGACGCGCCucCCGGgGggUCGgCa -3' miRNA: 3'- uuCCUGCGUGGccGGCUgCuuAGUgG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 121798 | 0.68 | 0.797412 |
Target: 5'- cGGGGcCGgGCCGGCCGuuGucggCACCc -3' miRNA: 3'- -UUCCuGCgUGGCCGGCugCuua-GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 30908 | 0.68 | 0.797412 |
Target: 5'- cGAGGACGaugACCuGGCCGACGGugagggCGgCg -3' miRNA: 3'- -UUCCUGCg--UGG-CCGGCUGCUua----GUgG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 86113 | 0.68 | 0.797412 |
Target: 5'- -cGGACGCccGCCGcGCCGcggucaGCGAGUC-CUg -3' miRNA: 3'- uuCCUGCG--UGGC-CGGC------UGCUUAGuGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 132668 | 0.68 | 0.797412 |
Target: 5'- aAAGGGCGCugCGacgcgucgcacGCCGACGcggCGCa -3' miRNA: 3'- -UUCCUGCGugGC-----------CGGCUGCuuaGUGg -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 2129 | 0.68 | 0.796518 |
Target: 5'- cAGGuccuCGC-CCGGCagCGGCGAguagaggAUCACCa -3' miRNA: 3'- uUCCu---GCGuGGCCG--GCUGCU-------UAGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 19989 | 0.68 | 0.794727 |
Target: 5'- -cGGACGCGgauuccggguucucCCGGCCGGCcggGGAggGCCc -3' miRNA: 3'- uuCCUGCGU--------------GGCCGGCUG---CUUagUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 142171 | 0.68 | 0.788412 |
Target: 5'- cAGGGACGCGCgCGGUucUGACGcggggucgaGcgCGCCa -3' miRNA: 3'- -UUCCUGCGUG-GCCG--GCUGC---------UuaGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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