miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 36485 0.74 0.49267
Target:  5'- gGAGGGgGCGCCGGCgCGACGcgggCgGCCg -3'
miRNA:   3'- -UUCCUgCGUGGCCG-GCUGCuua-G-UGG- -5'
5234 3' -56.6 NC_001798.1 + 36518 0.72 0.591099
Target:  5'- cGGGGGCGCGCggCGGCCGgGCGGGggcgCGCg -3'
miRNA:   3'- -UUCCUGCGUG--GCCGGC-UGCUUa---GUGg -5'
5234 3' -56.6 NC_001798.1 + 36560 0.72 0.591099
Target:  5'- cGGGGGCGCGCggCGGCCGgGCGGGggcgCGCg -3'
miRNA:   3'- -UUCCUGCGUG--GCCGGC-UGCUUa---GUGg -5'
5234 3' -56.6 NC_001798.1 + 36623 0.73 0.541139
Target:  5'- cGGGGGCGCGCggCGGCCgGGCGGGggcgCGCUu -3'
miRNA:   3'- -UUCCUGCGUG--GCCGG-CUGCUUa---GUGG- -5'
5234 3' -56.6 NC_001798.1 + 37088 0.73 0.541139
Target:  5'- cAGGGACGuCGCCGGuuGGgcuUGuuUCACCg -3'
miRNA:   3'- -UUCCUGC-GUGGCCggCU---GCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 37990 0.66 0.898295
Target:  5'- gGGGGAUGCACCGGa-GACGu----CCu -3'
miRNA:   3'- -UUCCUGCGUGGCCggCUGCuuaguGG- -5'
5234 3' -56.6 NC_001798.1 + 39551 0.71 0.662056
Target:  5'- uGGGugGCGCCggGGCCGucCGuccgCGCCg -3'
miRNA:   3'- uUCCugCGUGG--CCGGCu-GCuua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 39618 0.72 0.570982
Target:  5'- uGGaGACGCGCCGGCgggguuuuggUGugGAGUCggcGCCg -3'
miRNA:   3'- uUC-CUGCGUGGCCG----------GCugCUUAG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 41550 0.66 0.877328
Target:  5'- cGGGGCGCACCgcguaaauacaucGGUgGAgCGGAcuggCACCa -3'
miRNA:   3'- uUCCUGCGUGG-------------CCGgCU-GCUUa---GUGG- -5'
5234 3' -56.6 NC_001798.1 + 41865 0.7 0.702251
Target:  5'- cAGGGCGC-CgCGGCCGG-GGAUCAgCu -3'
miRNA:   3'- uUCCUGCGuG-GCCGGCUgCUUAGUgG- -5'
5234 3' -56.6 NC_001798.1 + 42688 0.68 0.788412
Target:  5'- cGGGAC-CACCGGCguCGGgGAaccaguccccGUCGCCg -3'
miRNA:   3'- uUCCUGcGUGGCCG--GCUgCU----------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 42727 0.69 0.751119
Target:  5'- --cGuCGcCACCGGCCGAgGGcccGUCGCCc -3'
miRNA:   3'- uucCuGC-GUGGCCGGCUgCU---UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 47059 0.71 0.651927
Target:  5'- cGGGGACGCGCaauGCCGggGCGAcagCGCCg -3'
miRNA:   3'- -UUCCUGCGUGgc-CGGC--UGCUua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 47183 0.69 0.751119
Target:  5'- cAGcGgGCACUGGCCGcCGggUCAgCCu -3'
miRNA:   3'- uUCcUgCGUGGCCGGCuGCuuAGU-GG- -5'
5234 3' -56.6 NC_001798.1 + 47862 0.67 0.831028
Target:  5'- cGGGGGCcccguggGCGCCGGCgGGCGc-UCGCa -3'
miRNA:   3'- -UUCCUG-------CGUGGCCGgCUGCuuAGUGg -5'
5234 3' -56.6 NC_001798.1 + 48779 0.68 0.797412
Target:  5'- cGGGGACGCACgGcacccCCGGCGAuUC-CCu -3'
miRNA:   3'- -UUCCUGCGUGgCc----GGCUGCUuAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 49037 0.66 0.898295
Target:  5'- ---uACGcCACCGGUCGGCuGAGUCAggcCCa -3'
miRNA:   3'- uuccUGC-GUGGCCGGCUG-CUUAGU---GG- -5'
5234 3' -56.6 NC_001798.1 + 51010 0.66 0.885012
Target:  5'- gGAGGACGaGCCcgagGGCgGugGAGUCGg- -3'
miRNA:   3'- -UUCCUGCgUGG----CCGgCugCUUAGUgg -5'
5234 3' -56.6 NC_001798.1 + 51917 0.66 0.870848
Target:  5'- --cGGCGUugCGGcCCGugGGGgcCGCCg -3'
miRNA:   3'- uucCUGCGugGCC-GGCugCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 52341 0.66 0.885012
Target:  5'- cGGGGuCGUGgCGGCCGAgcaCGAggCGCUg -3'
miRNA:   3'- -UUCCuGCGUgGCCGGCU---GCUuaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.