miRNA display CGI


Results 101 - 120 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 69224 0.66 0.870848
Target:  5'- aAAGGAgCGCcCCGGCCGGCuc--CGCg -3'
miRNA:   3'- -UUCCU-GCGuGGCCGGCUGcuuaGUGg -5'
5234 3' -56.6 NC_001798.1 + 69507 0.71 0.611334
Target:  5'- cAGGACGCGCCggagcggggcguGGCCcGCGAGcUCGCg -3'
miRNA:   3'- uUCCUGCGUGG------------CCGGcUGCUU-AGUGg -5'
5234 3' -56.6 NC_001798.1 + 70310 0.68 0.823494
Target:  5'- -cGGGCGCGgcggUCGGcCCGGCGGAggCGCg -3'
miRNA:   3'- uuCCUGCGU----GGCC-GGCUGCUUa-GUGg -5'
5234 3' -56.6 NC_001798.1 + 71424 0.67 0.84004
Target:  5'- -cGGACGCcccCCGGCC-ACGGGcUCAgCg -3'
miRNA:   3'- uuCCUGCGu--GGCCGGcUGCUU-AGUgG- -5'
5234 3' -56.6 NC_001798.1 + 71647 0.7 0.682235
Target:  5'- -uGGGCcCgGCCGuGCCGACGGAaCACCu -3'
miRNA:   3'- uuCCUGcG-UGGC-CGGCUGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 72921 0.72 0.601205
Target:  5'- gGAGcGCGCGCUGGUCGugGcgcgcuUCGCCa -3'
miRNA:   3'- -UUCcUGCGUGGCCGGCugCuu----AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 73726 0.67 0.863448
Target:  5'- -cGGGCGCGgcacacaugauuCCGGCCG-CGcuaccUCACCc -3'
miRNA:   3'- uuCCUGCGU------------GGCCGGCuGCuu---AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 73961 0.73 0.541139
Target:  5'- -uGGACGCGCgCGGCCG-CGGGcUCcggGCCg -3'
miRNA:   3'- uuCCUGCGUG-GCCGGCuGCUU-AG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 74397 0.68 0.779275
Target:  5'- cGGGGGCcgugGCGCCGGCgGACcuGAcCGCCg -3'
miRNA:   3'- -UUCCUG----CGUGGCCGgCUGc-UUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 74772 0.69 0.770007
Target:  5'- -cGGACGC-CgCGGCCu-CGggUcCACCg -3'
miRNA:   3'- uuCCUGCGuG-GCCGGcuGCuuA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 74865 0.66 0.891765
Target:  5'- gGAGGugGgGgCaGuGCCGGUGggUCGCCa -3'
miRNA:   3'- -UUCCugCgUgG-C-CGGCUGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 75459 0.66 0.883634
Target:  5'- cGGGGugGCcggcCCGGCCG-CGGcccugcuggacuUCACCc -3'
miRNA:   3'- -UUCCugCGu---GGCCGGCuGCUu-----------AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 75657 0.67 0.848037
Target:  5'- cAGGGACGUuauUCGGgaGACGGA-CGCCu -3'
miRNA:   3'- -UUCCUGCGu--GGCCggCUGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 76622 0.69 0.731818
Target:  5'- cGAGGccACGCGCaUGGCCGAaGAcgCGCUg -3'
miRNA:   3'- -UUCC--UGCGUG-GCCGGCUgCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 77217 0.66 0.870848
Target:  5'- -uGGACGCgGCCGuGCgGGCGcauggCGCCc -3'
miRNA:   3'- uuCCUGCG-UGGC-CGgCUGCuua--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 77614 0.72 0.579011
Target:  5'- cAAGGucaucggcgccacGCGaCGCCGcGCCGACGAacuugaggccgccGUCGCCg -3'
miRNA:   3'- -UUCC-------------UGC-GUGGC-CGGCUGCU-------------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 78131 0.68 0.797412
Target:  5'- uGGGGCGC-CUGGCgGACGAcAUgACg -3'
miRNA:   3'- uUCCUGCGuGGCCGgCUGCU-UAgUGg -5'
5234 3' -56.6 NC_001798.1 + 78233 0.77 0.345879
Target:  5'- -uGGACGCcauCCgGGCCGACGug-CACCg -3'
miRNA:   3'- uuCCUGCGu--GG-CCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 78381 0.73 0.502213
Target:  5'- cGAGGACGCGCUGGUCG-CGug-CGCg -3'
miRNA:   3'- -UUCCUGCGUGGCCGGCuGCuuaGUGg -5'
5234 3' -56.6 NC_001798.1 + 78565 0.78 0.268984
Target:  5'- cGGGAgGCGCUGGCCGcgcGCGAG-CGCCg -3'
miRNA:   3'- uUCCUgCGUGGCCGGC---UGCUUaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.