miRNA display CGI


Results 121 - 140 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 78639 0.69 0.722035
Target:  5'- gAAGGugGuCGCCGucCCGGCGAccGUgGCCa -3'
miRNA:   3'- -UUCCugC-GUGGCc-GGCUGCU--UAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 78682 0.67 0.855842
Target:  5'- cAGG-CGCGCuCGG-UGGCGGAgaUCGCCg -3'
miRNA:   3'- uUCCuGCGUG-GCCgGCUGCUU--AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 79057 0.68 0.778354
Target:  5'- cGGGGCuGCgggcccaGCCGGCCuACGAG-CGCCu -3'
miRNA:   3'- uUCCUG-CG-------UGGCCGGcUGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 79271 0.66 0.885012
Target:  5'- --cGACGCGgCGGCCG-CGGAccUgGCCc -3'
miRNA:   3'- uucCUGCGUgGCCGGCuGCUU--AgUGG- -5'
5234 3' -56.6 NC_001798.1 + 79872 0.75 0.428435
Target:  5'- -uGGACGCGgCGGCCGAgcUGuacGUCGCCc -3'
miRNA:   3'- uuCCUGCGUgGCCGGCU--GCu--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 80263 0.69 0.731818
Target:  5'- -cGGcACGCgGCUGGCCGACugg-CGCCg -3'
miRNA:   3'- uuCC-UGCG-UGGCCGGCUGcuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 80619 0.69 0.731818
Target:  5'- -uGGcCGUGCUGGCCGccGCGAccCACCg -3'
miRNA:   3'- uuCCuGCGUGGCCGGC--UGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 82825 0.66 0.870848
Target:  5'- -cGGAacCGCAUUGccccccGCCGACGAAcCACCc -3'
miRNA:   3'- uuCCU--GCGUGGC------CGGCUGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 83331 0.69 0.741515
Target:  5'- cGAGGGcCGCAgccauUCGGCCG-CGGcGUCGCCc -3'
miRNA:   3'- -UUCCU-GCGU-----GGCCGGCuGCU-UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 83676 0.78 0.275366
Target:  5'- uGGGAUGCACUGGCgGGCGGGacgguggcUCGCCc -3'
miRNA:   3'- uUCCUGCGUGGCCGgCUGCUU--------AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 84996 0.68 0.812369
Target:  5'- -cGGACGCgugcgccccgcucgACCGGCCauGGCGAcGUcCGCCc -3'
miRNA:   3'- uuCCUGCG--------------UGGCCGG--CUGCU-UA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 85041 0.66 0.904596
Target:  5'- gGGGGugccgucgaGCGcCGCCGuGCgCGAaGAGUCGCCg -3'
miRNA:   3'- -UUCC---------UGC-GUGGC-CG-GCUgCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 86113 0.68 0.797412
Target:  5'- -cGGACGCccGCCGcGCCGcggucaGCGAGUC-CUg -3'
miRNA:   3'- uuCCUGCG--UGGC-CGGC------UGCUUAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 86276 0.73 0.541139
Target:  5'- -cGGGCGCACCGGCgGG-GAAU-GCCu -3'
miRNA:   3'- uuCCUGCGUGGCCGgCUgCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 87289 0.67 0.863448
Target:  5'- -uGGuCGUGCUGGCCGACcgccacagCACCc -3'
miRNA:   3'- uuCCuGCGUGGCCGGCUGcuua----GUGG- -5'
5234 3' -56.6 NC_001798.1 + 87915 0.67 0.831856
Target:  5'- -cGGaACGCcCCGGgCGAUGGcgUACCc -3'
miRNA:   3'- uuCC-UGCGuGGCCgGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 87983 0.68 0.797412
Target:  5'- -uGGACGCGCCucCCGGgGggUCGgCa -3'
miRNA:   3'- uuCCUGCGUGGccGGCUgCuuAGUgG- -5'
5234 3' -56.6 NC_001798.1 + 88024 0.66 0.878038
Target:  5'- cGGGGGCGC-UUGGCCGGgGAGggcaggGCCg -3'
miRNA:   3'- -UUCCUGCGuGGCCGGCUgCUUag----UGG- -5'
5234 3' -56.6 NC_001798.1 + 88754 0.7 0.692268
Target:  5'- cGGGGGCGCgcauGCCGGCCGccucCGGaaaGUCgGCCa -3'
miRNA:   3'- -UUCCUGCG----UGGCCGGCu---GCU---UAG-UGG- -5'
5234 3' -56.6 NC_001798.1 + 88840 0.69 0.731818
Target:  5'- cGAGGA-GCAUcucgCGGCCGAUGGucGUCACg -3'
miRNA:   3'- -UUCCUgCGUG----GCCGGCUGCU--UAGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.