miRNA display CGI


Results 141 - 160 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 90395 0.7 0.682235
Target:  5'- gGGGGGCGCGguUgGGCCGGCGcGUUcCCg -3'
miRNA:   3'- -UUCCUGCGU--GgCCGGCUGCuUAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 91079 0.7 0.672161
Target:  5'- uAGGGGCGCGCCGGa-GGCGGccGUCguggACCc -3'
miRNA:   3'- -UUCCUGCGUGGCCggCUGCU--UAG----UGG- -5'
5234 3' -56.6 NC_001798.1 + 92320 0.66 0.904596
Target:  5'- -cGGcGCGCAgCGG-CGACGcggacGUCGCCg -3'
miRNA:   3'- uuCC-UGCGUgGCCgGCUGCu----UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 93369 0.74 0.49267
Target:  5'- -uGGACGaCGCCgGGCCGGCGGAcC-CCa -3'
miRNA:   3'- uuCCUGC-GUGG-CCGGCUGCUUaGuGG- -5'
5234 3' -56.6 NC_001798.1 + 94544 0.69 0.750163
Target:  5'- -cGGGCGCgagcGCCaacgcguccgaGGCCGccaaggcGCGggUCGCCa -3'
miRNA:   3'- uuCCUGCG----UGG-----------CCGGC-------UGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 97212 0.66 0.898295
Target:  5'- cAGGAgaccgcCGCGgUGGCCGugGAGcuggCGCUg -3'
miRNA:   3'- uUCCU------GCGUgGCCGGCugCUUa---GUGG- -5'
5234 3' -56.6 NC_001798.1 + 97312 0.69 0.741515
Target:  5'- -uGGACGCccugaucaucGgCGGCCaGGCGAcGUCGCCc -3'
miRNA:   3'- uuCCUGCG----------UgGCCGG-CUGCU-UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 97597 0.67 0.855842
Target:  5'- cAGGGGCGCAggGGCCGgagagcugggGCGAcAUCGCg -3'
miRNA:   3'- -UUCCUGCGUggCCGGC----------UGCU-UAGUGg -5'
5234 3' -56.6 NC_001798.1 + 97656 0.68 0.823494
Target:  5'- cGGGA-GCGCCGGCgGcuguacGCGGAcCGCCu -3'
miRNA:   3'- uUCCUgCGUGGCCGgC------UGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 98541 0.71 0.662056
Target:  5'- gGGGGcuugauuuGCGCGCUGGUCGugGGggCGCUg -3'
miRNA:   3'- -UUCC--------UGCGUGGCCGGCugCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 99188 0.69 0.759674
Target:  5'- cGGGACGaccacgagACCGacauggagcucaaGCCGGCGAagGUCGCCa -3'
miRNA:   3'- uUCCUGCg-------UGGC-------------CGGCUGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 102498 0.66 0.904596
Target:  5'- cGGGGACGgGCCGgcGCCGGgGuGUCcguagGCCa -3'
miRNA:   3'- -UUCCUGCgUGGC--CGGCUgCuUAG-----UGG- -5'
5234 3' -56.6 NC_001798.1 + 107400 0.83 0.149178
Target:  5'- gGAGGugGCgggaggacugggGCCGGCUGACGGggGUCGCCg -3'
miRNA:   3'- -UUCCugCG------------UGGCCGGCUGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 108597 0.66 0.885012
Target:  5'- -cGGcCGCGCCGGaCCG-CGAGggGCUu -3'
miRNA:   3'- uuCCuGCGUGGCC-GGCuGCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 108643 0.68 0.823494
Target:  5'- cGGGGCgaccgagagGCACCcggacGGCCGACGcaacgCGCCg -3'
miRNA:   3'- uUCCUG---------CGUGG-----CCGGCUGCuua--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 108940 0.66 0.870848
Target:  5'- cGGGACaGCccuCCGGCCGA--GAUCAUa -3'
miRNA:   3'- uUCCUG-CGu--GGCCGGCUgcUUAGUGg -5'
5234 3' -56.6 NC_001798.1 + 109112 0.68 0.779275
Target:  5'- -uGGACGC-CCu-CCGGCGggUgGCCg -3'
miRNA:   3'- uuCCUGCGuGGccGGCUGCuuAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 109700 0.7 0.682235
Target:  5'- -cGGGCGCGCCcucGGCCGagcaGCGGGaacgCGCCc -3'
miRNA:   3'- uuCCUGCGUGG---CCGGC----UGCUUa---GUGG- -5'
5234 3' -56.6 NC_001798.1 + 109915 0.7 0.682235
Target:  5'- -uGGACGCGCUGGCC-AUGGc-CACCc -3'
miRNA:   3'- uuCCUGCGUGGCCGGcUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 111137 0.66 0.898295
Target:  5'- cAGGGCgGCGCuguCGGCCcGCGcGUCGCUc -3'
miRNA:   3'- uUCCUG-CGUG---GCCGGcUGCuUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.