miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 124434 0.68 0.823494
Target:  5'- -cGGuCGCGCgGGCCGugGccagaGCCu -3'
miRNA:   3'- uuCCuGCGUGgCCGGCugCuuag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 122358 0.66 0.878038
Target:  5'- -cGGugGCGuggGGCgGGCGAcgCGCCc -3'
miRNA:   3'- uuCCugCGUgg-CCGgCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 122237 0.66 0.898295
Target:  5'- uGGGAaGCuCUGGCCGGCGGcg-ACCg -3'
miRNA:   3'- uUCCUgCGuGGCCGGCUGCUuagUGG- -5'
5234 3' -56.6 NC_001798.1 + 121798 0.68 0.797412
Target:  5'- cGGGGcCGgGCCGGCCGuuGucggCACCc -3'
miRNA:   3'- -UUCCuGCgUGGCCGGCugCuua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 120626 0.68 0.788412
Target:  5'- uAGGACGgGCCGGUCG-----UCGCCg -3'
miRNA:   3'- uUCCUGCgUGGCCGGCugcuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 117673 0.73 0.502213
Target:  5'- cGGGGACGCG-CGGCCGGCGGcguGUaCGCg -3'
miRNA:   3'- -UUCCUGCGUgGCCGGCUGCU---UA-GUGg -5'
5234 3' -56.6 NC_001798.1 + 116847 0.67 0.848037
Target:  5'- cGGGGCGCugCacGCCGGCGug-CugCu -3'
miRNA:   3'- uUCCUGCGugGc-CGGCUGCuuaGugG- -5'
5234 3' -56.6 NC_001798.1 + 116701 0.66 0.891765
Target:  5'- -cGGGCGCGUCGucGUCGACGGGccCGCCa -3'
miRNA:   3'- uuCCUGCGUGGC--CGGCUGCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 116450 0.75 0.418794
Target:  5'- -cGGcCGCACCGGCCGGcCGAcuggaccGUcCACCa -3'
miRNA:   3'- uuCCuGCGUGGCCGGCU-GCU-------UA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 116420 0.66 0.870848
Target:  5'- cAGGccCGCG-CGGCCGACGc--CGCCg -3'
miRNA:   3'- uUCCu-GCGUgGCCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 116199 0.73 0.531305
Target:  5'- -uGGGCGgGCaggcucaGGCCGAgcUGAAUCACCu -3'
miRNA:   3'- uuCCUGCgUGg------CCGGCU--GCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 114938 0.66 0.891765
Target:  5'- gAAGGugGaggaCACCgaGGCCGACGugccGGUgACCu -3'
miRNA:   3'- -UUCCugC----GUGG--CCGGCUGC----UUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 114869 0.77 0.330056
Target:  5'- -cGGGCG-GCCGGUCGACGGggugcugGUCACCa -3'
miRNA:   3'- uuCCUGCgUGGCCGGCUGCU-------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 114696 0.67 0.863448
Target:  5'- cAGGGuuGC-CCGGgCGACccuGGUCGCCg -3'
miRNA:   3'- -UUCCugCGuGGCCgGCUGc--UUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 113655 0.66 0.878038
Target:  5'- uGGGugGCGgCGGCgGACuGcuUUGCCg -3'
miRNA:   3'- uUCCugCGUgGCCGgCUG-CuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 113623 0.67 0.855842
Target:  5'- uGGGAauCGCcuGCgCGGCCGGCGc--CGCCa -3'
miRNA:   3'- uUCCU--GCG--UG-GCCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 113356 0.66 0.878038
Target:  5'- -cGGugGCGCCGGCauguauuauagcCGcCGuccUCGCCu -3'
miRNA:   3'- uuCCugCGUGGCCG------------GCuGCuu-AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 112783 0.66 0.897652
Target:  5'- -cGGACGCACggaugugCGGCUcGCGAAcCACa -3'
miRNA:   3'- uuCCUGCGUG-------GCCGGcUGCUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 112413 0.69 0.751119
Target:  5'- -uGGugGCAUagcugagcuccaUGGCCGGCGAGcCACg -3'
miRNA:   3'- uuCCugCGUG------------GCCGGCUGCUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 111315 0.72 0.581022
Target:  5'- -uGGAUGUACCGaCCGACGAGcCGCa -3'
miRNA:   3'- uuCCUGCGUGGCcGGCUGCUUaGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.