Results 101 - 120 of 220 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 78565 | 0.78 | 0.268984 |
Target: 5'- cGGGAgGCGCUGGCCGcgcGCGAG-CGCCg -3' miRNA: 3'- uUCCUgCGUGGCCGGC---UGCUUaGUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 78381 | 0.73 | 0.502213 |
Target: 5'- cGAGGACGCGCUGGUCG-CGug-CGCg -3' miRNA: 3'- -UUCCUGCGUGGCCGGCuGCuuaGUGg -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 78233 | 0.77 | 0.345879 |
Target: 5'- -uGGACGCcauCCgGGCCGACGug-CACCg -3' miRNA: 3'- uuCCUGCGu--GG-CCGGCUGCuuaGUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 78131 | 0.68 | 0.797412 |
Target: 5'- uGGGGCGC-CUGGCgGACGAcAUgACg -3' miRNA: 3'- uUCCUGCGuGGCCGgCUGCU-UAgUGg -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 77614 | 0.72 | 0.579011 |
Target: 5'- cAAGGucaucggcgccacGCGaCGCCGcGCCGACGAacuugaggccgccGUCGCCg -3' miRNA: 3'- -UUCC-------------UGC-GUGGC-CGGCUGCU-------------UAGUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 77217 | 0.66 | 0.870848 |
Target: 5'- -uGGACGCgGCCGuGCgGGCGcauggCGCCc -3' miRNA: 3'- uuCCUGCG-UGGC-CGgCUGCuua--GUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 76622 | 0.69 | 0.731818 |
Target: 5'- cGAGGccACGCGCaUGGCCGAaGAcgCGCUg -3' miRNA: 3'- -UUCC--UGCGUG-GCCGGCUgCUuaGUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 75657 | 0.67 | 0.848037 |
Target: 5'- cAGGGACGUuauUCGGgaGACGGA-CGCCu -3' miRNA: 3'- -UUCCUGCGu--GGCCggCUGCUUaGUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 75459 | 0.66 | 0.883634 |
Target: 5'- cGGGGugGCcggcCCGGCCG-CGGcccugcuggacuUCACCc -3' miRNA: 3'- -UUCCugCGu---GGCCGGCuGCUu-----------AGUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 74865 | 0.66 | 0.891765 |
Target: 5'- gGAGGugGgGgCaGuGCCGGUGggUCGCCa -3' miRNA: 3'- -UUCCugCgUgG-C-CGGCUGCuuAGUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 74772 | 0.69 | 0.770007 |
Target: 5'- -cGGACGC-CgCGGCCu-CGggUcCACCg -3' miRNA: 3'- uuCCUGCGuG-GCCGGcuGCuuA-GUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 74397 | 0.68 | 0.779275 |
Target: 5'- cGGGGGCcgugGCGCCGGCgGACcuGAcCGCCg -3' miRNA: 3'- -UUCCUG----CGUGGCCGgCUGc-UUaGUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 73961 | 0.73 | 0.541139 |
Target: 5'- -uGGACGCGCgCGGCCG-CGGGcUCcggGCCg -3' miRNA: 3'- uuCCUGCGUG-GCCGGCuGCUU-AG---UGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 73726 | 0.67 | 0.863448 |
Target: 5'- -cGGGCGCGgcacacaugauuCCGGCCG-CGcuaccUCACCc -3' miRNA: 3'- uuCCUGCGU------------GGCCGGCuGCuu---AGUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 72921 | 0.72 | 0.601205 |
Target: 5'- gGAGcGCGCGCUGGUCGugGcgcgcuUCGCCa -3' miRNA: 3'- -UUCcUGCGUGGCCGGCugCuu----AGUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 71647 | 0.7 | 0.682235 |
Target: 5'- -uGGGCcCgGCCGuGCCGACGGAaCACCu -3' miRNA: 3'- uuCCUGcG-UGGC-CGGCUGCUUaGUGG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 71424 | 0.67 | 0.84004 |
Target: 5'- -cGGACGCcccCCGGCC-ACGGGcUCAgCg -3' miRNA: 3'- uuCCUGCGu--GGCCGGcUGCUU-AGUgG- -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 70310 | 0.68 | 0.823494 |
Target: 5'- -cGGGCGCGgcggUCGGcCCGGCGGAggCGCg -3' miRNA: 3'- uuCCUGCGU----GGCC-GGCUGCUUa-GUGg -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 69507 | 0.71 | 0.611334 |
Target: 5'- cAGGACGCGCCggagcggggcguGGCCcGCGAGcUCGCg -3' miRNA: 3'- uUCCUGCGUGG------------CCGGcUGCUU-AGUGg -5' |
|||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 69224 | 0.66 | 0.870848 |
Target: 5'- aAAGGAgCGCcCCGGCCGGCuc--CGCg -3' miRNA: 3'- -UUCCU-GCGuGGCCGGCUGcuuaGUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home