miRNA display CGI


Results 121 - 140 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 67791 0.8 0.23318
Target:  5'- cAGGACaGCACCGGCCGACaGGAaCGCa -3'
miRNA:   3'- uUCCUG-CGUGGCCGGCUG-CUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 67739 1.08 0.002949
Target:  5'- aAAGGACGCACCGGCCGACGAAUCACCc -3'
miRNA:   3'- -UUCCUGCGUGGCCGGCUGCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 66841 0.68 0.806264
Target:  5'- --cGGCGCccagGCCGGgguuuCCGGgGAGUCGCCg -3'
miRNA:   3'- uucCUGCG----UGGCC-----GGCUgCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 66362 0.69 0.722035
Target:  5'- cAGGAUGCGauacaGGCgGGCGGAcCGCCg -3'
miRNA:   3'- uUCCUGCGUgg---CCGgCUGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 66031 0.68 0.814961
Target:  5'- --uGugGCGCauGCCG-CGggUCGCCc -3'
miRNA:   3'- uucCugCGUGgcCGGCuGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 62855 0.7 0.702251
Target:  5'- cAAGGACGUcCUGGCUaaaucuggGACGAGUaGCCg -3'
miRNA:   3'- -UUCCUGCGuGGCCGG--------CUGCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 62446 0.68 0.806264
Target:  5'- -cGGACGuCGCCggugGGCCGcGCGAcggCGCCc -3'
miRNA:   3'- uuCCUGC-GUGG----CCGGC-UGCUua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 62089 0.72 0.600193
Target:  5'- -uGGACaucaGCACCGGCuacauucCGACGAuUCACUg -3'
miRNA:   3'- uuCCUG----CGUGGCCG-------GCUGCUuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 61891 0.67 0.831856
Target:  5'- -cGGGCGCGCCcucgaaGCCGGCccugCGCCu -3'
miRNA:   3'- uuCCUGCGUGGc-----CGGCUGcuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 61193 0.66 0.885012
Target:  5'- -cGGcCuGCACCGgcgcgcGCCGGCGGuugCACCa -3'
miRNA:   3'- uuCCuG-CGUGGC------CGGCUGCUua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 58900 0.68 0.779275
Target:  5'- gGAGG-CGCGCCGGCCucccCGAGgcuCCa -3'
miRNA:   3'- -UUCCuGCGUGGCCGGcu--GCUUaguGG- -5'
5234 3' -56.6 NC_001798.1 + 57746 0.68 0.823494
Target:  5'- -uGGGCGCGcCCGGCgcagCGAgGAggGUUGCCg -3'
miRNA:   3'- uuCCUGCGU-GGCCG----GCUgCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 57160 0.67 0.831856
Target:  5'- -cGGGCugGCGCCcgGGCCGGCGcccuccgcccaGAUCACg -3'
miRNA:   3'- uuCCUG--CGUGG--CCGGCUGC-----------UUAGUGg -5'
5234 3' -56.6 NC_001798.1 + 56559 0.66 0.87375
Target:  5'- uGGGACGCGaCGGCCaccuucuccgccggcGAgGAGUCGuCCc -3'
miRNA:   3'- uUCCUGCGUgGCCGG---------------CUgCUUAGU-GG- -5'
5234 3' -56.6 NC_001798.1 + 55995 0.67 0.84004
Target:  5'- cGGGGGCGagggGCUGGuaGGCGggUC-CCg -3'
miRNA:   3'- -UUCCUGCg---UGGCCggCUGCuuAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 55168 0.72 0.570982
Target:  5'- -cGGAccaaCGCGCUGGCCaacgacggcccGACGAacGUCGCCg -3'
miRNA:   3'- uuCCU----GCGUGGCCGG-----------CUGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 54560 0.66 0.898295
Target:  5'- cGGGGucccgagcccUGCGCCGGCCGGCcGGcCACg -3'
miRNA:   3'- uUCCU----------GCGUGGCCGGCUGcUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 53805 0.69 0.751119
Target:  5'- -uGGAUGCugUGGaCGGCGGacaaguacguguGUCGCCg -3'
miRNA:   3'- uuCCUGCGugGCCgGCUGCU------------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 52523 0.66 0.904596
Target:  5'- -cGGccgcGCGCGCCGuGCUGGCGAcggggcUCAUCc -3'
miRNA:   3'- uuCC----UGCGUGGC-CGGCUGCUu-----AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 52491 0.7 0.692268
Target:  5'- cGGGGACGCgcGCCGGCgcaggGACGAcgCGgCg -3'
miRNA:   3'- -UUCCUGCG--UGGCCGg----CUGCUuaGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.