miRNA display CGI


Results 81 - 100 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 75459 0.66 0.883634
Target:  5'- cGGGGugGCcggcCCGGCCG-CGGcccugcuggacuUCACCc -3'
miRNA:   3'- -UUCCugCGu---GGCCGGCuGCUu-----------AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 152050 0.66 0.878038
Target:  5'- gGGGGGCgGCGCaCGGCCcACGGggGUCcCCc -3'
miRNA:   3'- -UUCCUG-CGUG-GCCGGcUGCU--UAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 125711 0.66 0.878038
Target:  5'- -cGGGCGCGCgCGGgggCGGCGAGaugaGCCg -3'
miRNA:   3'- uuCCUGCGUG-GCCg--GCUGCUUag--UGG- -5'
5234 3' -56.6 NC_001798.1 + 88024 0.66 0.878038
Target:  5'- cGGGGGCGC-UUGGCCGGgGAGggcaggGCCg -3'
miRNA:   3'- -UUCCUGCGuGGCCGGCUgCUUag----UGG- -5'
5234 3' -56.6 NC_001798.1 + 130763 0.66 0.878038
Target:  5'- ----cCGCACCGGaCCGACGAuacgauggugcGUCggcGCCg -3'
miRNA:   3'- uuccuGCGUGGCC-GGCUGCU-----------UAG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 122358 0.66 0.878038
Target:  5'- -cGGugGCGuggGGCgGGCGAcgCGCCc -3'
miRNA:   3'- uuCCugCGUgg-CCGgCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 113655 0.66 0.878038
Target:  5'- uGGGugGCGgCGGCgGACuGcuUUGCCg -3'
miRNA:   3'- uUCCugCGUgGCCGgCUG-CuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 52341 0.66 0.885012
Target:  5'- cGGGGuCGUGgCGGCCGAgcaCGAggCGCUg -3'
miRNA:   3'- -UUCCuGCGUgGCCGGCU---GCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 61193 0.66 0.885012
Target:  5'- -cGGcCuGCACCGgcgcgcGCCGGCGGuugCACCa -3'
miRNA:   3'- uuCCuG-CGUGGC------CGGCUGCUua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 108597 0.66 0.885012
Target:  5'- -cGGcCGCGCCGGaCCG-CGAGggGCUu -3'
miRNA:   3'- uuCCuGCGUGGCC-GGCuGCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 114938 0.66 0.891765
Target:  5'- gAAGGugGaggaCACCgaGGCCGACGugccGGUgACCu -3'
miRNA:   3'- -UUCCugC----GUGG--CCGGCUGC----UUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 22935 0.66 0.891765
Target:  5'- --cGACGCcgccgccgauGCCGuGCCGACGAGgcgGCCc -3'
miRNA:   3'- uucCUGCG----------UGGC-CGGCUGCUUag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 21035 0.66 0.891765
Target:  5'- aAGGcGGCGC-CCGGCCuGCGAGaaagCGCg -3'
miRNA:   3'- -UUC-CUGCGuGGCCGGcUGCUUa---GUGg -5'
5234 3' -56.6 NC_001798.1 + 25817 0.66 0.891765
Target:  5'- uGGGGC-UGCUGGCCGGCGccugcGAcCGCCg -3'
miRNA:   3'- uUCCUGcGUGGCCGGCUGC-----UUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 154099 0.66 0.889763
Target:  5'- cGGGGCGCgGCCGGCgccggggaccccggCGGCGGGg-ACCc -3'
miRNA:   3'- uUCCUGCG-UGGCCG--------------GCUGCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 2414 0.66 0.889763
Target:  5'- cGAGGGCGCcggcguguggcuggGCCccggcGGCUGGCGg--CGCCa -3'
miRNA:   3'- -UUCCUGCG--------------UGG-----CCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 79271 0.66 0.885012
Target:  5'- --cGACGCGgCGGCCG-CGGAccUgGCCc -3'
miRNA:   3'- uucCUGCGUgGCCGGCuGCUU--AgUGG- -5'
5234 3' -56.6 NC_001798.1 + 51010 0.66 0.885012
Target:  5'- gGAGGACGaGCCcgagGGCgGugGAGUCGg- -3'
miRNA:   3'- -UUCCUGCgUGG----CCGgCugCUUAGUgg -5'
5234 3' -56.6 NC_001798.1 + 139291 0.66 0.885012
Target:  5'- cGGGGGCGCAuaGcGCCG-CG--UCGCCg -3'
miRNA:   3'- -UUCCUGCGUggC-CGGCuGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 137989 0.66 0.885012
Target:  5'- -uGGGCGCGCCGcaGCUcGCGGucgcgCGCCu -3'
miRNA:   3'- uuCCUGCGUGGC--CGGcUGCUua---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.