miRNA display CGI


Results 121 - 140 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 73726 0.67 0.863448
Target:  5'- -cGGGCGCGgcacacaugauuCCGGCCG-CGcuaccUCACCc -3'
miRNA:   3'- uuCCUGCGU------------GGCCGGCuGCuu---AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 34848 0.67 0.863448
Target:  5'- -cGGAC-CGCCGGgCGGgGGA-CGCCu -3'
miRNA:   3'- uuCCUGcGUGGCCgGCUgCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 56559 0.66 0.87375
Target:  5'- uGGGACGCGaCGGCCaccuucuccgccggcGAgGAGUCGuCCc -3'
miRNA:   3'- uUCCUGCGUgGCCGG---------------CUgCUUAGU-GG- -5'
5234 3' -56.6 NC_001798.1 + 41550 0.66 0.877328
Target:  5'- cGGGGCGCACCgcguaaauacaucGGUgGAgCGGAcuggCACCa -3'
miRNA:   3'- uUCCUGCGUGG-------------CCGgCU-GCUUa---GUGG- -5'
5234 3' -56.6 NC_001798.1 + 8792 0.66 0.878038
Target:  5'- cGGGACGgGCgaGGCCG-CGGGguaaagcggCACCg -3'
miRNA:   3'- uUCCUGCgUGg-CCGGCuGCUUa--------GUGG- -5'
5234 3' -56.6 NC_001798.1 + 108597 0.66 0.885012
Target:  5'- -cGGcCGCGCCGGaCCG-CGAGggGCUu -3'
miRNA:   3'- uuCCuGCGUGGCC-GGCuGCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 61193 0.66 0.885012
Target:  5'- -cGGcCuGCACCGgcgcgcGCCGGCGGuugCACCa -3'
miRNA:   3'- uuCCuG-CGUGGC------CGGCUGCUua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 52341 0.66 0.885012
Target:  5'- cGGGGuCGUGgCGGCCGAgcaCGAggCGCUg -3'
miRNA:   3'- -UUCCuGCGUgGCCGGCU---GCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 3433 0.66 0.885012
Target:  5'- cAGGGGCGCGuaGGCgCGGCGcaggcuGGUCAgCa -3'
miRNA:   3'- -UUCCUGCGUggCCG-GCUGC------UUAGUgG- -5'
5234 3' -56.6 NC_001798.1 + 25959 0.66 0.885012
Target:  5'- ----gUGCGCUGGCCGGCGGcgCgggACCu -3'
miRNA:   3'- uuccuGCGUGGCCGGCUGCUuaG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 128300 0.66 0.884324
Target:  5'- --uGACGCGCCGcgcccccccguccGCCGcCGAagccGUCGCCc -3'
miRNA:   3'- uucCUGCGUGGC-------------CGGCuGCU----UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 75459 0.66 0.883634
Target:  5'- cGGGGugGCcggcCCGGCCG-CGGcccugcuggacuUCACCc -3'
miRNA:   3'- -UUCCugCGu---GGCCGGCuGCUu-----------AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 152050 0.66 0.878038
Target:  5'- gGGGGGCgGCGCaCGGCCcACGGggGUCcCCc -3'
miRNA:   3'- -UUCCUG-CGUG-GCCGGcUGCU--UAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 125711 0.66 0.878038
Target:  5'- -cGGGCGCGCgCGGgggCGGCGAGaugaGCCg -3'
miRNA:   3'- uuCCUGCGUG-GCCg--GCUGCUUag--UGG- -5'
5234 3' -56.6 NC_001798.1 + 88024 0.66 0.878038
Target:  5'- cGGGGGCGC-UUGGCCGGgGAGggcaggGCCg -3'
miRNA:   3'- -UUCCUGCGuGGCCGGCUgCUUag----UGG- -5'
5234 3' -56.6 NC_001798.1 + 130763 0.66 0.878038
Target:  5'- ----cCGCACCGGaCCGACGAuacgauggugcGUCggcGCCg -3'
miRNA:   3'- uuccuGCGUGGCC-GGCUGCU-----------UAG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 122358 0.66 0.878038
Target:  5'- -cGGugGCGuggGGCgGGCGAcgCGCCc -3'
miRNA:   3'- uuCCugCGUgg-CCGgCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 113655 0.66 0.878038
Target:  5'- uGGGugGCGgCGGCgGACuGcuUUGCCg -3'
miRNA:   3'- uUCCugCGUgGCCGgCUG-CuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 113356 0.66 0.878038
Target:  5'- -cGGugGCGCCGGCauguauuauagcCGcCGuccUCGCCu -3'
miRNA:   3'- uuCCugCGUGGCCG------------GCuGCuu-AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 34989 0.66 0.878038
Target:  5'- -cGGGgGCcccuCCGGCCGG-GGcgCACCu -3'
miRNA:   3'- uuCCUgCGu---GGCCGGCUgCUuaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.