Results 41 - 60 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 79271 | 0.66 | 0.885012 |
Target: 5'- --cGACGCGgCGGCCG-CGGAccUgGCCc -3' miRNA: 3'- uucCUGCGUgGCCGGCuGCUU--AgUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 128300 | 0.66 | 0.884324 |
Target: 5'- --uGACGCGCCGcgcccccccguccGCCGcCGAagccGUCGCCc -3' miRNA: 3'- uucCUGCGUGGC-------------CGGCuGCU----UAGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 75459 | 0.66 | 0.883634 |
Target: 5'- cGGGGugGCcggcCCGGCCG-CGGcccugcuggacuUCACCc -3' miRNA: 3'- -UUCCugCGu---GGCCGGCuGCUu-----------AGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 8792 | 0.66 | 0.878038 |
Target: 5'- cGGGACGgGCgaGGCCG-CGGGguaaagcggCACCg -3' miRNA: 3'- uUCCUGCgUGg-CCGGCuGCUUa--------GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 34989 | 0.66 | 0.878038 |
Target: 5'- -cGGGgGCcccuCCGGCCGG-GGcgCACCu -3' miRNA: 3'- uuCCUgCGu---GGCCGGCUgCUuaGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 113356 | 0.66 | 0.878038 |
Target: 5'- -cGGugGCGCCGGCauguauuauagcCGcCGuccUCGCCu -3' miRNA: 3'- uuCCugCGUGGCCG------------GCuGCuu-AGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 113655 | 0.66 | 0.878038 |
Target: 5'- uGGGugGCGgCGGCgGACuGcuUUGCCg -3' miRNA: 3'- uUCCugCGUgGCCGgCUG-CuuAGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 122358 | 0.66 | 0.878038 |
Target: 5'- -cGGugGCGuggGGCgGGCGAcgCGCCc -3' miRNA: 3'- uuCCugCGUgg-CCGgCUGCUuaGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 130763 | 0.66 | 0.878038 |
Target: 5'- ----cCGCACCGGaCCGACGAuacgauggugcGUCggcGCCg -3' miRNA: 3'- uuccuGCGUGGCC-GGCUGCU-----------UAG---UGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 88024 | 0.66 | 0.878038 |
Target: 5'- cGGGGGCGC-UUGGCCGGgGAGggcaggGCCg -3' miRNA: 3'- -UUCCUGCGuGGCCGGCUgCUUag----UGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 125711 | 0.66 | 0.878038 |
Target: 5'- -cGGGCGCGCgCGGgggCGGCGAGaugaGCCg -3' miRNA: 3'- uuCCUGCGUG-GCCg--GCUGCUUag--UGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 152050 | 0.66 | 0.878038 |
Target: 5'- gGGGGGCgGCGCaCGGCCcACGGggGUCcCCc -3' miRNA: 3'- -UUCCUG-CGUG-GCCGGcUGCU--UAGuGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 41550 | 0.66 | 0.877328 |
Target: 5'- cGGGGCGCACCgcguaaauacaucGGUgGAgCGGAcuggCACCa -3' miRNA: 3'- uUCCUGCGUGG-------------CCGgCU-GCUUa---GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 56559 | 0.66 | 0.87375 |
Target: 5'- uGGGACGCGaCGGCCaccuucuccgccggcGAgGAGUCGuCCc -3' miRNA: 3'- uUCCUGCGUgGCCGG---------------CUgCUUAGU-GG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 51917 | 0.66 | 0.870848 |
Target: 5'- --cGGCGUugCGGcCCGugGGGgcCGCCg -3' miRNA: 3'- uucCUGCGugGCC-GGCugCUUa-GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 69224 | 0.66 | 0.870848 |
Target: 5'- aAAGGAgCGCcCCGGCCGGCuc--CGCg -3' miRNA: 3'- -UUCCU-GCGuGGCCGGCUGcuuaGUGg -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 77217 | 0.66 | 0.870848 |
Target: 5'- -uGGACGCgGCCGuGCgGGCGcauggCGCCc -3' miRNA: 3'- uuCCUGCG-UGGC-CGgCUGCuua--GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 82825 | 0.66 | 0.870848 |
Target: 5'- -cGGAacCGCAUUGccccccGCCGACGAAcCACCc -3' miRNA: 3'- uuCCU--GCGUGGC------CGGCUGCUUaGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 108940 | 0.66 | 0.870848 |
Target: 5'- cGGGACaGCccuCCGGCCGA--GAUCAUa -3' miRNA: 3'- uUCCUG-CGu--GGCCGGCUgcUUAGUGg -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 24980 | 0.66 | 0.870848 |
Target: 5'- aGAGccuGCGCccccuGCUGGCCGACaccGUCGCCg -3' miRNA: 3'- -UUCc--UGCG-----UGGCCGGCUGcu-UAGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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