Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5237 | 3' | -57.8 | NC_001798.1 | + | 66284 | 1.08 | 0.002096 |
Target: 5'- cAGGUCCACCUCCUUGGAGCGCAUCCAu -3' miRNA: 3'- -UCCAGGUGGAGGAACCUCGCGUAGGU- -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 96669 | 0.73 | 0.421287 |
Target: 5'- cGGcgCCACggCCgcgcUGGAGCGCGUCCGg -3' miRNA: 3'- uCCa-GGUGgaGGa---ACCUCGCGUAGGU- -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 89130 | 0.73 | 0.457182 |
Target: 5'- cGGUCCGCCUCCa-GGuGCGCGacggCCu -3' miRNA: 3'- uCCAGGUGGAGGaaCCuCGCGUa---GGu -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 71897 | 0.72 | 0.494653 |
Target: 5'- aAGaUCCGCUUCCcggcccUGGAGgGCAUCCAc -3' miRNA: 3'- -UCcAGGUGGAGGa-----ACCUCgCGUAGGU- -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 77968 | 0.7 | 0.60363 |
Target: 5'- --aUCCACCgCCUcggcUGGAGCGCGgcguUCCAc -3' miRNA: 3'- uccAGGUGGaGGA----ACCUCGCGU----AGGU- -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 52171 | 0.69 | 0.634149 |
Target: 5'- gAGG-CCGCgUUUgcGGGGCGCGUCCu -3' miRNA: 3'- -UCCaGGUGgAGGaaCCUCGCGUAGGu -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 62274 | 0.68 | 0.694919 |
Target: 5'- cAGGcCCGCCgggcggcCCggcgGGAGCGCG-CCAa -3' miRNA: 3'- -UCCaGGUGGa------GGaa--CCUCGCGUaGGU- -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 128416 | 0.67 | 0.772686 |
Target: 5'- cGGGgccugacgaCCGCCUCCacgcugcggUGGGGCGCgcaggGUCCGu -3' miRNA: 3'- -UCCa--------GGUGGAGGa--------ACCUCGCG-----UAGGU- -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 81415 | 0.67 | 0.781943 |
Target: 5'- uGGaUCCACggCCUggaGGAGCugGCGUCCGa -3' miRNA: 3'- uCC-AGGUGgaGGAa--CCUCG--CGUAGGU- -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 34990 | 0.67 | 0.781943 |
Target: 5'- gGGGgCC-CCUCCggccGGGGCGCA-CCu -3' miRNA: 3'- -UCCaGGuGGAGGaa--CCUCGCGUaGGu -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 43116 | 0.67 | 0.781943 |
Target: 5'- cGGU-CGCUUCCggcgGGcGCGCGUCCc -3' miRNA: 3'- uCCAgGUGGAGGaa--CCuCGCGUAGGu -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 88973 | 0.67 | 0.781943 |
Target: 5'- gAGGaCgGCCUCCUcgGGGGUGCucugggggAUCCGc -3' miRNA: 3'- -UCCaGgUGGAGGAa-CCUCGCG--------UAGGU- -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 138153 | 0.67 | 0.781943 |
Target: 5'- cGGUCgCGCCcccgggUCCUgGGGGCGCGaCCc -3' miRNA: 3'- uCCAG-GUGG------AGGAaCCUCGCGUaGGu -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 91112 | 0.67 | 0.791067 |
Target: 5'- cGGUgCgCugCUCCgcgGGGGCGUccucGUCCAg -3' miRNA: 3'- uCCA-G-GugGAGGaa-CCUCGCG----UAGGU- -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 95901 | 0.66 | 0.817554 |
Target: 5'- cGGGcUCuCGCCUCCUugUGGuGGCGaGUCCu -3' miRNA: 3'- -UCC-AG-GUGGAGGA--ACC-UCGCgUAGGu -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 23647 | 0.66 | 0.834392 |
Target: 5'- cGGG-CCGCC----UGGAGCGCcgCCGg -3' miRNA: 3'- -UCCaGGUGGaggaACCUCGCGuaGGU- -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 146993 | 0.66 | 0.834392 |
Target: 5'- aGGGUCCGCCUCUUgccucggGGAcccccGgGCGggCCGg -3' miRNA: 3'- -UCCAGGUGGAGGAa------CCU-----CgCGUa-GGU- -5' |
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5237 | 3' | -57.8 | NC_001798.1 | + | 12184 | 0.66 | 0.842542 |
Target: 5'- cAGGUCCuCUUCCacgaagcccUGGGGCcccacggccccgGCAUCCAc -3' miRNA: 3'- -UCCAGGuGGAGGa--------ACCUCG------------CGUAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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