miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5237 5' -58.5 NC_001798.1 + 132369 0.66 0.858882
Target:  5'- aCCGGGUggucaucuacacaACGGu--CGUgacGGUGGGCCu -3'
miRNA:   3'- gGGCCCA-------------UGCCuacGCGu--CCACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 94998 0.66 0.859623
Target:  5'- gCCUGGGccccgcAgGGcgGCGCGGGccUGGagGCCg -3'
miRNA:   3'- -GGGCCCa-----UgCCuaCGCGUCC--ACC--UGG- -5'
5237 5' -58.5 NC_001798.1 + 6546 0.66 0.859623
Target:  5'- gCCGGGgggACGGGgggacggGC-CGGGgGGACg -3'
miRNA:   3'- gGGCCCa--UGCCUa------CGcGUCCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 71092 0.66 0.859623
Target:  5'- gCCCGcGGU-CGGcGUGCGCGcccccGG-GGACg -3'
miRNA:   3'- -GGGC-CCAuGCC-UACGCGU-----CCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 108028 0.66 0.859623
Target:  5'- cUCCGaGGUGCGGAgccucuuuggGcCGUGGGUacGGACa -3'
miRNA:   3'- -GGGC-CCAUGCCUa---------C-GCGUCCA--CCUGg -5'
5237 5' -58.5 NC_001798.1 + 3666 0.66 0.84443
Target:  5'- cCCCGGGcGCcac-GCGCGGGUucuGGAgCCa -3'
miRNA:   3'- -GGGCCCaUGccuaCGCGUCCA---CCU-GG- -5'
5237 5' -58.5 NC_001798.1 + 126350 0.66 0.84443
Target:  5'- uUCCGGGaGCGGcuucGCGCGGGacUGucCCg -3'
miRNA:   3'- -GGGCCCaUGCCua--CGCGUCC--ACcuGG- -5'
5237 5' -58.5 NC_001798.1 + 135491 0.67 0.811937
Target:  5'- cCCCGGGgacGCGGAcgccGCGCAcGGcGcGAUCc -3'
miRNA:   3'- -GGGCCCa--UGCCUa---CGCGU-CCaC-CUGG- -5'
5237 5' -58.5 NC_001798.1 + 104503 0.67 0.817812
Target:  5'- gCCGcGUgccaaaaacgcgGCGGcgGCGCGguugacgucgucgcGGUGGGCCa -3'
miRNA:   3'- gGGCcCA------------UGCCuaCGCGU--------------CCACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 31331 0.67 0.819477
Target:  5'- cCCUGcGGccgGCGGGggGCGCgcgcaggcgcggcGGGUGGGCg -3'
miRNA:   3'- -GGGC-CCa--UGCCUa-CGCG-------------UCCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 10689 0.67 0.820306
Target:  5'- aCCCacg-ACGG--GCGCAGG-GGACCg -3'
miRNA:   3'- -GGGcccaUGCCuaCGCGUCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 51484 0.67 0.820306
Target:  5'- gUCGGGccCGGA-GCuGCAGGcggcauucccccUGGACCg -3'
miRNA:   3'- gGGCCCauGCCUaCG-CGUCC------------ACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 149659 0.67 0.820306
Target:  5'- gCCGGGcgcCGGGU-CGCGGGccccgggcucgGGGCCg -3'
miRNA:   3'- gGGCCCau-GCCUAcGCGUCCa----------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 34744 0.66 0.828517
Target:  5'- gCCCGGGaGCGGGgcgGCcCGGGagGGAg- -3'
miRNA:   3'- -GGGCCCaUGCCUa--CGcGUCCa-CCUgg -5'
5237 5' -58.5 NC_001798.1 + 91959 0.66 0.834965
Target:  5'- cCCCGGGcccccccguccgGCGcGAUcCGguGGcGGGCCa -3'
miRNA:   3'- -GGGCCCa-----------UGC-CUAcGCguCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 28569 0.66 0.83656
Target:  5'- gCCGcGcGUGCaGGUGCGCcaucuGGUGG-CCu -3'
miRNA:   3'- gGGC-C-CAUGcCUACGCGu----CCACCuGG- -5'
5237 5' -58.5 NC_001798.1 + 30162 0.66 0.83656
Target:  5'- gCCgGGGUgagggagggacACGGGggacacgGCGCGGG-GGuCCc -3'
miRNA:   3'- -GGgCCCA-----------UGCCUa------CGCGUCCaCCuGG- -5'
5237 5' -58.5 NC_001798.1 + 39419 0.66 0.83656
Target:  5'- aCCGGGgcGCGGccguccgcGUGCGgGGGggucagGGACa -3'
miRNA:   3'- gGGCCCa-UGCC--------UACGCgUCCa-----CCUGg -5'
5237 5' -58.5 NC_001798.1 + 21494 0.66 0.842087
Target:  5'- cCCCGGGUcACcguaccugcgauaaGGcUGCaGUGGGUGGAUg -3'
miRNA:   3'- -GGGCCCA-UG--------------CCuACG-CGUCCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 95295 0.66 0.842087
Target:  5'- gCCGGGUuuGuGUGCGCggcgucgagucucgGGGgcgGGGCCc -3'
miRNA:   3'- gGGCCCAugCcUACGCG--------------UCCa--CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.