miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5239 3' -60.6 NC_001798.1 + 1228 0.68 0.582333
Target:  5'- -gCGGCCGACgcCCAGcguAUCUgcgggggcGGGCCCGc -3'
miRNA:   3'- gaGCCGGCUGa-GGUC---UAGG--------UCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 2080 0.7 0.495797
Target:  5'- gCUCGGCgGACcacUCCGGGgg-GGGCCCGc -3'
miRNA:   3'- -GAGCCGgCUG---AGGUCUaggUCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 2117 0.7 0.468213
Target:  5'- -gCGGCCcGCggCCAGGUCCucGCCCGg -3'
miRNA:   3'- gaGCCGGcUGa-GGUCUAGGucCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 2443 0.68 0.611984
Target:  5'- -gCGGCUGGCggcgCCAGccgcccugcggGUCgGGGCCCu -3'
miRNA:   3'- gaGCCGGCUGa---GGUC-----------UAGgUCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 2793 0.67 0.621905
Target:  5'- --aGGCgCgGGCUCCgcggcAGcgCCGGGCCCAg -3'
miRNA:   3'- gagCCG-G-CUGAGG-----UCuaGGUCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 3512 0.66 0.681328
Target:  5'- -gCGGCCGcCaCguGcgCCAGGCCCc -3'
miRNA:   3'- gaGCCGGCuGaGguCuaGGUCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 4887 0.72 0.366685
Target:  5'- gUCGGCUGGaUCCGGAgaUCCGGGgCCGc -3'
miRNA:   3'- gAGCCGGCUgAGGUCU--AGGUCCgGGU- -5'
5239 3' -60.6 NC_001798.1 + 18790 0.67 0.671474
Target:  5'- uUCGGCaaug-CCGGAUCCuGGCCUc -3'
miRNA:   3'- gAGCCGgcugaGGUCUAGGuCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 21787 0.69 0.524093
Target:  5'- -aCGGCCcGCcCCccGUCCGGGCCCGc -3'
miRNA:   3'- gaGCCGGcUGaGGucUAGGUCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 22811 0.71 0.414707
Target:  5'- -gCGGCCccgGAuCUCCGGAUCCAGccgacggaccgccGCCCAc -3'
miRNA:   3'- gaGCCGG---CU-GAGGUCUAGGUC-------------CGGGU- -5'
5239 3' -60.6 NC_001798.1 + 24075 0.66 0.739366
Target:  5'- --aGGCCuGCuUCCGGAUCuCGGGCgCGg -3'
miRNA:   3'- gagCCGGcUG-AGGUCUAG-GUCCGgGU- -5'
5239 3' -60.6 NC_001798.1 + 24570 0.66 0.739366
Target:  5'- -gCGGCCGGCgCgCGGAggCGGGCCg- -3'
miRNA:   3'- gaGCCGGCUGaG-GUCUagGUCCGGgu -5'
5239 3' -60.6 NC_001798.1 + 24668 0.67 0.651683
Target:  5'- -gCGGCCGug-CCGGGgcuggCCGGaGCCCGg -3'
miRNA:   3'- gaGCCGGCugaGGUCUa----GGUC-CGGGU- -5'
5239 3' -60.6 NC_001798.1 + 25262 0.71 0.441439
Target:  5'- -gCGGCUGGCgccgCCAGccgCCGGGgCCCAg -3'
miRNA:   3'- gaGCCGGCUGa---GGUCua-GGUCC-GGGU- -5'
5239 3' -60.6 NC_001798.1 + 28869 0.7 0.477322
Target:  5'- cCUCGGCCGGCggagccCCGGAgcUCCgaAGGUCUg -3'
miRNA:   3'- -GAGCCGGCUGa-----GGUCU--AGG--UCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 29851 0.69 0.533663
Target:  5'- --aGGgCGACccCCGGGUCuCAGGCCCc -3'
miRNA:   3'- gagCCgGCUGa-GGUCUAG-GUCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 34797 0.66 0.681328
Target:  5'- -cCGGCgCGGC-CCGGggCCccgGGGCCCc -3'
miRNA:   3'- gaGCCG-GCUGaGGUCuaGG---UCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 35400 0.68 0.572508
Target:  5'- --gGGCCGGCcgCCGGAUgCCcgcggGGGCCUAa -3'
miRNA:   3'- gagCCGGCUGa-GGUCUA-GG-----UCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 54551 0.69 0.533663
Target:  5'- -gCGGCCGAC-CgGGGUCCcGaGCCCu -3'
miRNA:   3'- gaGCCGGCUGaGgUCUAGGuC-CGGGu -5'
5239 3' -60.6 NC_001798.1 + 55937 0.67 0.651683
Target:  5'- aUCGcuCCGACgCC-GAUCCAGGCCaCGg -3'
miRNA:   3'- gAGCc-GGCUGaGGuCUAGGUCCGG-GU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.