miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5239 3' -60.6 NC_001798.1 + 94236 0.67 0.641761
Target:  5'- cCUC-GCCGugUaCCAGGaCCuGGCCCu -3'
miRNA:   3'- -GAGcCGGCugA-GGUCUaGGuCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 2793 0.67 0.621905
Target:  5'- --aGGCgCgGGCUCCgcggcAGcgCCGGGCCCAg -3'
miRNA:   3'- gagCCG-G-CUGAGG-----UCuaGGUCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 127469 0.68 0.611984
Target:  5'- aCUCGGCCGAgaCCAacacCCAcGGCCUg -3'
miRNA:   3'- -GAGCCGGCUgaGGUcua-GGU-CCGGGu -5'
5239 3' -60.6 NC_001798.1 + 135514 0.68 0.611984
Target:  5'- -aCGGCgCGA-UCCAGGacgcccgCCGGGCCCu -3'
miRNA:   3'- gaGCCG-GCUgAGGUCUa------GGUCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 2443 0.68 0.611984
Target:  5'- -gCGGCUGGCggcgCCAGccgcccugcggGUCgGGGCCCu -3'
miRNA:   3'- gaGCCGGCUGa---GGUC-----------UAGgUCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 117279 0.68 0.592191
Target:  5'- uCUgGGCCaGCUCCAGGU---GGCCCGc -3'
miRNA:   3'- -GAgCCGGcUGAGGUCUAgguCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 150027 0.68 0.592191
Target:  5'- gUCGcCCGAgUCCGaGUCCGGGgCCCGg -3'
miRNA:   3'- gAGCcGGCUgAGGUcUAGGUCC-GGGU- -5'
5239 3' -60.6 NC_001798.1 + 111529 0.68 0.582333
Target:  5'- aCUCGGCguggGGCUCC---UCCAGcGCCCGg -3'
miRNA:   3'- -GAGCCGg---CUGAGGucuAGGUC-CGGGU- -5'
5239 3' -60.6 NC_001798.1 + 1228 0.68 0.582333
Target:  5'- -gCGGCCGACgcCCAGcguAUCUgcgggggcGGGCCCGc -3'
miRNA:   3'- gaGCCGGCUGa-GGUC---UAGG--------UCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 71712 0.68 0.572508
Target:  5'- -aCGGCCGagcgccGCUUCAGcgCCGGccaGCCCAg -3'
miRNA:   3'- gaGCCGGC------UGAGGUCuaGGUC---CGGGU- -5'
5239 3' -60.6 NC_001798.1 + 146479 0.68 0.572508
Target:  5'- ---cGCgGGCUCCGGggCCGGGCCgGg -3'
miRNA:   3'- gagcCGgCUGAGGUCuaGGUCCGGgU- -5'
5239 3' -60.6 NC_001798.1 + 35400 0.68 0.572508
Target:  5'- --gGGCCGGCcgCCGGAUgCCcgcggGGGCCUAa -3'
miRNA:   3'- gagCCGGCUGa-GGUCUA-GG-----UCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 103478 0.68 0.572508
Target:  5'- -aCGcaCCGugUCUGGGUCCAGGgCCAg -3'
miRNA:   3'- gaGCc-GGCugAGGUCUAGGUCCgGGU- -5'
5239 3' -60.6 NC_001798.1 + 70101 0.68 0.562723
Target:  5'- gUCGGacagCGcGCUCCAGGUcCCGGcGCCCGc -3'
miRNA:   3'- gAGCCg---GC-UGAGGUCUA-GGUC-CGGGU- -5'
5239 3' -60.6 NC_001798.1 + 137389 0.69 0.537509
Target:  5'- cCUCGGCguuCUCCcgggcgaccgggaucGGGUCCGGGUCCGg -3'
miRNA:   3'- -GAGCCGgcuGAGG---------------UCUAGGUCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 29851 0.69 0.533663
Target:  5'- --aGGgCGACccCCGGGUCuCAGGCCCc -3'
miRNA:   3'- gagCCgGCUGa-GGUCUAG-GUCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 54551 0.69 0.533663
Target:  5'- -gCGGCCGAC-CgGGGUCCcGaGCCCu -3'
miRNA:   3'- gaGCCGGCUGaGgUCUAGGuC-CGGGu -5'
5239 3' -60.6 NC_001798.1 + 91003 0.69 0.533663
Target:  5'- --aGGCgcaagCGACgcggCCAGAagcccUCCGGGCCCAc -3'
miRNA:   3'- gagCCG-----GCUGa---GGUCU-----AGGUCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 78574 0.69 0.524093
Target:  5'- -cUGGCCGcGCgCgAGcgCCGGGCCCAg -3'
miRNA:   3'- gaGCCGGC-UGaGgUCuaGGUCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 21787 0.69 0.524093
Target:  5'- -aCGGCCcGCcCCccGUCCGGGCCCGc -3'
miRNA:   3'- gaGCCGGcUGaGGucUAGGUCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.