Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5239 | 5' | -58.3 | NC_001798.1 | + | 100853 | 0.68 | 0.668728 |
Target: 5'- uGCCGUGgggcUGCuGGUCCUGgCcgGCCu-- -3' miRNA: 3'- -CGGCAC----ACGuCCGGGAC-GuaCGGuua -5' |
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5239 | 5' | -58.3 | NC_001798.1 | + | 105420 | 0.68 | 0.637938 |
Target: 5'- gGCCGcgGUGCGcuGGgCCUGCAgcacUGCCGc- -3' miRNA: 3'- -CGGCa-CACGU--CCgGGACGU----ACGGUua -5' |
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5239 | 5' | -58.3 | NC_001798.1 | + | 107197 | 0.69 | 0.607106 |
Target: 5'- gGCCGUGUugGCGuucguGGCCCU-CAUGCCc-- -3' miRNA: 3'- -CGGCACA--CGU-----CCGGGAcGUACGGuua -5' |
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5239 | 5' | -58.3 | NC_001798.1 | + | 122597 | 0.69 | 0.617375 |
Target: 5'- -gCGUGUcuGCGGGCCCUGg--GCCAc- -3' miRNA: 3'- cgGCACA--CGUCCGGGACguaCGGUua -5' |
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5239 | 5' | -58.3 | NC_001798.1 | + | 129533 | 0.69 | 0.617375 |
Target: 5'- uCCGgg-GCGcGGCCCUGCugcUGCCGAc -3' miRNA: 3'- cGGCacaCGU-CCGGGACGu--ACGGUUa -5' |
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5239 | 5' | -58.3 | NC_001798.1 | + | 131125 | 0.75 | 0.289298 |
Target: 5'- -aCGUGgccaGCAGGCUCUGCGUGuCCAAc -3' miRNA: 3'- cgGCACa---CGUCCGGGACGUAC-GGUUa -5' |
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5239 | 5' | -58.3 | NC_001798.1 | + | 134235 | 0.66 | 0.748848 |
Target: 5'- cCUGUG-GCGGGCgCUGUAUGCg--- -3' miRNA: 3'- cGGCACaCGUCCGgGACGUACGguua -5' |
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5239 | 5' | -58.3 | NC_001798.1 | + | 135799 | 0.74 | 0.347594 |
Target: 5'- gGCCGUGUGCGcGGCCCgggGCGUcauggaggacGCCu-- -3' miRNA: 3'- -CGGCACACGU-CCGGGa--CGUA----------CGGuua -5' |
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5239 | 5' | -58.3 | NC_001798.1 | + | 149665 | 0.67 | 0.709317 |
Target: 5'- cGCCGgGUcGCGGGCCCcggGCucgggGCCGc- -3' miRNA: 3'- -CGGCaCA-CGUCCGGGa--CGua---CGGUua -5' |
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5239 | 5' | -58.3 | NC_001798.1 | + | 153702 | 0.68 | 0.668728 |
Target: 5'- cGCCG-GcGCAGGCUCagGCGcGCCAGg -3' miRNA: 3'- -CGGCaCaCGUCCGGGa-CGUaCGGUUa -5' |
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5239 | 5' | -58.3 | NC_001798.1 | + | 154293 | 0.69 | 0.586633 |
Target: 5'- gGCCGUGuUGCGGGCCCUcuuaagggGCGgcgGCa--- -3' miRNA: 3'- -CGGCAC-ACGUCCGGGA--------CGUa--CGguua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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