miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5239 5' -58.3 NC_001798.1 + 65022 1.08 0.001549
Target:  5'- cGCCGUGUGCAGGCCCUGCAUGCCAAUg -3'
miRNA:   3'- -CGGCACACGUCCGGGACGUACGGUUA- -5'
5239 5' -58.3 NC_001798.1 + 30554 0.77 0.213465
Target:  5'- uGCCGUGUGCAcGGacgagaucgccccgcCCCUGCGcUGCCAGa -3'
miRNA:   3'- -CGGCACACGU-CC---------------GGGACGU-ACGGUUa -5'
5239 5' -58.3 NC_001798.1 + 2018 0.77 0.233209
Target:  5'- gGCCGUG-GCGGGCCC-GCAgaGCCGGUu -3'
miRNA:   3'- -CGGCACaCGUCCGGGaCGUa-CGGUUA- -5'
5239 5' -58.3 NC_001798.1 + 131125 0.75 0.289298
Target:  5'- -aCGUGgccaGCAGGCUCUGCGUGuCCAAc -3'
miRNA:   3'- cgGCACa---CGUCCGGGACGUAC-GGUUa -5'
5239 5' -58.3 NC_001798.1 + 135799 0.74 0.347594
Target:  5'- gGCCGUGUGCGcGGCCCgggGCGUcauggaggacGCCu-- -3'
miRNA:   3'- -CGGCACACGU-CCGGGa--CGUA----------CGGuua -5'
5239 5' -58.3 NC_001798.1 + 81731 0.73 0.388081
Target:  5'- cGCgCGUGcGCAGGuCCCgccggacGCGUGCCAAa -3'
miRNA:   3'- -CG-GCACaCGUCC-GGGa------CGUACGGUUa -5'
5239 5' -58.3 NC_001798.1 + 76130 0.71 0.458951
Target:  5'- aGCCGUauacaGcGCgaAGGCCCUGCAgGCCAGc -3'
miRNA:   3'- -CGGCA-----CaCG--UCCGGGACGUaCGGUUa -5'
5239 5' -58.3 NC_001798.1 + 92950 0.7 0.556188
Target:  5'- cGCCGU-----GGCCCUGCGUGCCc-- -3'
miRNA:   3'- -CGGCAcacguCCGGGACGUACGGuua -5'
5239 5' -58.3 NC_001798.1 + 154293 0.69 0.586633
Target:  5'- gGCCGUGuUGCGGGCCCUcuuaagggGCGgcgGCa--- -3'
miRNA:   3'- -CGGCAC-ACGUCCGGGA--------CGUa--CGguua -5'
5239 5' -58.3 NC_001798.1 + 107197 0.69 0.607106
Target:  5'- gGCCGUGUugGCGuucguGGCCCU-CAUGCCc-- -3'
miRNA:   3'- -CGGCACA--CGU-----CCGGGAcGUACGGuua -5'
5239 5' -58.3 NC_001798.1 + 129533 0.69 0.617375
Target:  5'- uCCGgg-GCGcGGCCCUGCugcUGCCGAc -3'
miRNA:   3'- cGGCacaCGU-CCGGGACGu--ACGGUUa -5'
5239 5' -58.3 NC_001798.1 + 122597 0.69 0.617375
Target:  5'- -gCGUGUcuGCGGGCCCUGg--GCCAc- -3'
miRNA:   3'- cgGCACA--CGUCCGGGACguaCGGUua -5'
5239 5' -58.3 NC_001798.1 + 105420 0.68 0.637938
Target:  5'- gGCCGcgGUGCGcuGGgCCUGCAgcacUGCCGc- -3'
miRNA:   3'- -CGGCa-CACGU--CCgGGACGU----ACGGUua -5'
5239 5' -58.3 NC_001798.1 + 94239 0.68 0.658483
Target:  5'- cGCCGUGUaccagGaccuGGCCCUGagccaGUGCCAc- -3'
miRNA:   3'- -CGGCACA-----Cgu--CCGGGACg----UACGGUua -5'
5239 5' -58.3 NC_001798.1 + 15545 0.68 0.668728
Target:  5'- uUCGUGUGCccGGCCCcggGCGuUGCCGc- -3'
miRNA:   3'- cGGCACACGu-CCGGGa--CGU-ACGGUua -5'
5239 5' -58.3 NC_001798.1 + 153702 0.68 0.668728
Target:  5'- cGCCG-GcGCAGGCUCagGCGcGCCAGg -3'
miRNA:   3'- -CGGCaCaCGUCCGGGa-CGUaCGGUUa -5'
5239 5' -58.3 NC_001798.1 + 100853 0.68 0.668728
Target:  5'- uGCCGUGgggcUGCuGGUCCUGgCcgGCCu-- -3'
miRNA:   3'- -CGGCAC----ACGuCCGGGAC-GuaCGGuua -5'
5239 5' -58.3 NC_001798.1 + 74401 0.68 0.675882
Target:  5'- gGCCGUGgcgccgGCGgaccugaccgccgcGGCCCUGCAccucuacgggGCCAGc -3'
miRNA:   3'- -CGGCACa-----CGU--------------CCGGGACGUa---------CGGUUa -5'
5239 5' -58.3 NC_001798.1 + 69164 0.68 0.678943
Target:  5'- gGCCGg--GCGGaGCCCgaugGCggGCCAGg -3'
miRNA:   3'- -CGGCacaCGUC-CGGGa---CGuaCGGUUa -5'
5239 5' -58.3 NC_001798.1 + 79054 0.67 0.699246
Target:  5'- uGUCGggGcUGCGGGCCCaGCcgGCCu-- -3'
miRNA:   3'- -CGGCa-C-ACGUCCGGGaCGuaCGGuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.