miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5240 3' -63.9 NC_001798.1 + 111085 0.66 0.567898
Target:  5'- cGGGCgagacggacccccccGGGGU-CAGGCGuugcgaguccacaaAGcgcaGCAGGGCg -3'
miRNA:   3'- aCCCG---------------CCCCAgGUCCGU--------------UC----CGUCCCG- -5'
5240 3' -63.9 NC_001798.1 + 150619 0.66 0.566934
Target:  5'- aUGGG-GGGcUCCuGGGCcgcGCGGGGCu -3'
miRNA:   3'- -ACCCgCCCcAGG-UCCGuucCGUCCCG- -5'
5240 3' -63.9 NC_001798.1 + 102209 0.66 0.566934
Target:  5'- cGGcGCGccGGGagucgaCCGGGCGcGGCucGGGGCg -3'
miRNA:   3'- aCC-CGC--CCCa-----GGUCCGUuCCG--UCCCG- -5'
5240 3' -63.9 NC_001798.1 + 88367 0.66 0.566934
Target:  5'- cGGGCaGGGGUcgcgCCAGcCAcuccucuGCGGGGCg -3'
miRNA:   3'- aCCCG-CCCCA----GGUCcGUuc-----CGUCCCG- -5'
5240 3' -63.9 NC_001798.1 + 28195 0.66 0.566934
Target:  5'- aGGGCGGGGggaAGGCGccggAGGCcccGCa -3'
miRNA:   3'- aCCCGCCCCaggUCCGU----UCCGuccCG- -5'
5240 3' -63.9 NC_001798.1 + 25583 0.66 0.565972
Target:  5'- cGGGCGaGGaCCuGGCcgcGGGCcgcgccgGGGGCg -3'
miRNA:   3'- aCCCGCcCCaGGuCCGu--UCCG-------UCCCG- -5'
5240 3' -63.9 NC_001798.1 + 5054 0.66 0.564048
Target:  5'- gGGGgGGGGUCuucuucuucuucuuCAGGgGcGGCAGuGGg -3'
miRNA:   3'- aCCCgCCCCAG--------------GUCCgUuCCGUC-CCg -5'
5240 3' -63.9 NC_001798.1 + 33794 0.66 0.557327
Target:  5'- cUGGcuGCGGGGagacucccaUCgGGGCGAGG--GGGCu -3'
miRNA:   3'- -ACC--CGCCCC---------AGgUCCGUUCCguCCCG- -5'
5240 3' -63.9 NC_001798.1 + 11156 0.66 0.557327
Target:  5'- gGGGgGGGGgaaauaaCCAcgaugggggcGGUggGGC-GGGCc -3'
miRNA:   3'- aCCCgCCCCa------GGU----------CCGuuCCGuCCCG- -5'
5240 3' -63.9 NC_001798.1 + 23879 0.66 0.557327
Target:  5'- cUGGG-GGGcGcCCgAGGCGgaggAGGCGcGGGCc -3'
miRNA:   3'- -ACCCgCCC-CaGG-UCCGU----UCCGU-CCCG- -5'
5240 3' -63.9 NC_001798.1 + 33432 0.66 0.557327
Target:  5'- gGGGgGGGGUcagccgcaccaCCGGcGCGAaGCcaGGGGCc -3'
miRNA:   3'- aCCCgCCCCA-----------GGUC-CGUUcCG--UCCCG- -5'
5240 3' -63.9 NC_001798.1 + 11346 0.66 0.557327
Target:  5'- cGGcGuCGGGGUuuGGGgGGGGUguuuGGGUg -3'
miRNA:   3'- aCC-C-GCCCCAggUCCgUUCCGu---CCCG- -5'
5240 3' -63.9 NC_001798.1 + 106814 0.66 0.557327
Target:  5'- gGGGUGGGGaagaccaccaccUCCGcGCAgcugauggAGGCccuGGGGCc -3'
miRNA:   3'- aCCCGCCCC------------AGGUcCGU--------UCCG---UCCCG- -5'
5240 3' -63.9 NC_001798.1 + 136112 0.66 0.557327
Target:  5'- cUGGuGUuuacgGGGGUUCuggaAGGCGugugGGGCgAGGGCg -3'
miRNA:   3'- -ACC-CG-----CCCCAGG----UCCGU----UCCG-UCCCG- -5'
5240 3' -63.9 NC_001798.1 + 147485 0.66 0.557327
Target:  5'- --cGcCGGGGgacCCAGGCuccgggGGGGgGGGGCg -3'
miRNA:   3'- accC-GCCCCa--GGUCCG------UUCCgUCCCG- -5'
5240 3' -63.9 NC_001798.1 + 102615 0.66 0.555411
Target:  5'- aGaGGCGGGGauccacaaauaacUCCcgucgccGGGCGgcggagGGGCcGGGGCg -3'
miRNA:   3'- aC-CCGCCCC-------------AGG-------UCCGU------UCCG-UCCCG- -5'
5240 3' -63.9 NC_001798.1 + 154126 0.66 0.551584
Target:  5'- gGcGGCGGGGaCCccGGCGGcgggacauggcgggcGGCuGGGCu -3'
miRNA:   3'- aC-CCGCCCCaGGu-CCGUU---------------CCGuCCCG- -5'
5240 3' -63.9 NC_001798.1 + 15351 0.66 0.547766
Target:  5'- gGGGCgaggcggugagGGGGgaaucggCCguGGGCGcGGCGGaGGCg -3'
miRNA:   3'- aCCCG-----------CCCCa------GG--UCCGUuCCGUC-CCG- -5'
5240 3' -63.9 NC_001798.1 + 148047 0.66 0.547766
Target:  5'- cGGGCGGGG---GGGUGGuGGUAGuGGUg -3'
miRNA:   3'- aCCCGCCCCaggUCCGUU-CCGUC-CCG- -5'
5240 3' -63.9 NC_001798.1 + 128678 0.66 0.547766
Target:  5'- cGuGCGGGGUCCucauggacGGCcacacGGGCauggugGGGGCg -3'
miRNA:   3'- aCcCGCCCCAGGu-------CCGu----UCCG------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.