Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5241 | 3' | -58.4 | NC_001798.1 | + | 67185 | 0.68 | 0.722822 |
Target: 5'- aGgggGGAgGAGggGGCGGggggacaGCCuGGGGUc -3' miRNA: 3'- gCa--CCUgCUCuuCCGCC-------UGG-UCCCAc -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 142480 | 0.68 | 0.723788 |
Target: 5'- aCG-GGACGGcccccGAGGCGGcGCgGGGGUGc -3' miRNA: 3'- -GCaCCUGCUc----UUCCGCC-UGgUCCCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 147010 | 0.68 | 0.74293 |
Target: 5'- uCGgGGACccccGGGCGGGCCGGGGc- -3' miRNA: 3'- -GCaCCUGcucuUCCGCCUGGUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 74515 | 0.68 | 0.74293 |
Target: 5'- gCG-GGGCGAGAucGGgGGGCuCGGGGc- -3' miRNA: 3'- -GCaCCUGCUCUu-CCgCCUG-GUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 14989 | 0.68 | 0.74293 |
Target: 5'- -uUGGGCGGGggGGCGaGGCguguuGGGGg- -3' miRNA: 3'- gcACCUGCUCuuCCGC-CUGg----UCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 151589 | 0.68 | 0.74008 |
Target: 5'- gCGUGGGgcugcccuggcgcuCGGccGggGGcCGGGCCGGGGg- -3' miRNA: 3'- -GCACCU--------------GCU--CuuCC-GCCUGGUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 124565 | 0.68 | 0.7334 |
Target: 5'- gGUcGAUcucgGGGAGGGCGGcACCGGGGa- -3' miRNA: 3'- gCAcCUG----CUCUUCCGCC-UGGUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 101849 | 0.68 | 0.7334 |
Target: 5'- gCGUGGGuccCGGcGgcGGCGGAggGGGGUGg -3' miRNA: 3'- -GCACCU---GCU-CuuCCGCCUggUCCCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 15194 | 0.69 | 0.644888 |
Target: 5'- gGUGGGgGGGcuGGCGaGCCGGGGg- -3' miRNA: 3'- gCACCUgCUCuuCCGCcUGGUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 144575 | 0.69 | 0.644888 |
Target: 5'- --aGGGCGAGGacGGGCGG-CU-GGGUGg -3' miRNA: 3'- gcaCCUGCUCU--UCCGCCuGGuCCCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 148274 | 0.69 | 0.644888 |
Target: 5'- aGgagGGGCGGGcguGGCGGGCaggugugcgggCGGGGUGg -3' miRNA: 3'- gCa--CCUGCUCuu-CCGCCUG-----------GUCCCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 39880 | 0.69 | 0.654867 |
Target: 5'- gGUGccGGCGuccucGGGGCGGGCCGGGGg- -3' miRNA: 3'- gCAC--CUGCuc---UUCCGCCUGGUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 122210 | 0.69 | 0.654867 |
Target: 5'- uCGcUGGuCGAGu-GGCuGGACCGcGGGUGg -3' miRNA: 3'- -GC-ACCuGCUCuuCCG-CCUGGU-CCCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 85811 | 0.69 | 0.661843 |
Target: 5'- cCGgGGGCGAugacgggggggggcGggGGCGGGCgGGGGc- -3' miRNA: 3'- -GCaCCUGCU--------------CuuCCGCCUGgUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 150192 | 0.69 | 0.664829 |
Target: 5'- --cGcGGCGuGGggGGCGGcACCGGGGg- -3' miRNA: 3'- gcaC-CUGC-UCuuCCGCC-UGGUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 100990 | 0.69 | 0.670795 |
Target: 5'- gCGUGGGCGGGGAGGgGGAggaaggcgcggaGGGGg- -3' miRNA: 3'- -GCACCUGCUCUUCCgCCUgg----------UCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 31044 | 0.69 | 0.673774 |
Target: 5'- gGUcGGGCGGGGgucGGGCGGgggucgggcacuaACCGGGGg- -3' miRNA: 3'- gCA-CCUGCUCU---UCCGCC-------------UGGUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 130896 | 0.69 | 0.674766 |
Target: 5'- --aGGACGuAGAuaAGGUGGGCCAGcuggcugaugcGGUGg -3' miRNA: 3'- gcaCCUGC-UCU--UCCGCCUGGUC-----------CCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 31146 | 0.69 | 0.674766 |
Target: 5'- --cGGcGCGGGGGcGGCGGugCGGGGg- -3' miRNA: 3'- gcaCC-UGCUCUU-CCGCCugGUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 56203 | 0.69 | 0.68467 |
Target: 5'- nGUGGugGGuacGggGGaCGGAa-GGGGUGg -3' miRNA: 3'- gCACCugCU---CuuCC-GCCUggUCCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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