miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 147010 0.68 0.74293
Target:  5'- uCGgGGACccccGGGCGGGCCGGGGc- -3'
miRNA:   3'- -GCaCCUGcucuUCCGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 124565 0.68 0.7334
Target:  5'- gGUcGAUcucgGGGAGGGCGGcACCGGGGa- -3'
miRNA:   3'- gCAcCUG----CUCUUCCGCC-UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 96029 0.68 0.7141
Target:  5'- cCGgcgGGGCGGGcGGGCGGGCgAcGGGc- -3'
miRNA:   3'- -GCa--CCUGCUCuUCCGCCUGgU-CCCac -5'
5241 3' -58.4 NC_001798.1 + 6386 0.68 0.7141
Target:  5'- --nGGGCcGGggGGCcgggGGGCCGGGGg- -3'
miRNA:   3'- gcaCCUGcUCuuCCG----CCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 66448 0.68 0.7141
Target:  5'- gCGUGuauGCGuuGGGGgGGACCGGGGg- -3'
miRNA:   3'- -GCACc--UGCucUUCCgCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 34156 0.68 0.7141
Target:  5'- aCGacGACGGGggGGgGGgaaACgGGGGUGg -3'
miRNA:   3'- -GCacCUGCUCuuCCgCC---UGgUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 52963 0.68 0.704345
Target:  5'- aCGUGucCGGGAGGcGCGcGACCGGGcUGg -3'
miRNA:   3'- -GCACcuGCUCUUC-CGC-CUGGUCCcAC- -5'
5241 3' -58.4 NC_001798.1 + 45984 0.68 0.704345
Target:  5'- uCGUGGAUGuugucGGGGgGGAuCCAGGGg- -3'
miRNA:   3'- -GCACCUGCuc---UUCCgCCU-GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 122069 0.68 0.704345
Target:  5'- gCGUcGGACGcGGAGGCGGugCuggcGGGc- -3'
miRNA:   3'- -GCA-CCUGCuCUUCCGCCugGu---CCCac -5'
5241 3' -58.4 NC_001798.1 + 142480 0.68 0.723788
Target:  5'- aCG-GGACGGcccccGAGGCGGcGCgGGGGUGc -3'
miRNA:   3'- -GCaCCUGCUc----UUCCGCC-UGgUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 101849 0.68 0.7334
Target:  5'- gCGUGGGuccCGGcGgcGGCGGAggGGGGUGg -3'
miRNA:   3'- -GCACCU---GCU-CuuCCGCCUggUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 16228 0.67 0.797867
Target:  5'- uGUGGG-GGGgcGGUgGGGCCGGGGc- -3'
miRNA:   3'- gCACCUgCUCuuCCG-CCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 56516 0.67 0.789019
Target:  5'- gGUGGAgCG-GAucguGGCGGuGCCGGGGc- -3'
miRNA:   3'- gCACCU-GCuCUu---CCGCC-UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 27224 0.67 0.780037
Target:  5'- gCG-GGGCGcggGGGAGGCGGcCgCGGGGg- -3'
miRNA:   3'- -GCaCCUGC---UCUUCCGCCuG-GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 44398 0.67 0.780037
Target:  5'- aCGUGGGCcGGGAGcaauggggucccGCGGcCCAGGGc- -3'
miRNA:   3'- -GCACCUGcUCUUC------------CGCCuGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 11658 0.67 0.779132
Target:  5'- cCGgGGGCGGGGgucgggucucgggGGGaGGACgGGGGUGu -3'
miRNA:   3'- -GCaCCUGCUCU-------------UCCgCCUGgUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 69167 0.67 0.761702
Target:  5'- --cGGGCGGagcccGAuGGCGGGCCAG-GUGg -3'
miRNA:   3'- gcaCCUGCU-----CUuCCGCCUGGUCcCAC- -5'
5241 3' -58.4 NC_001798.1 + 31804 0.67 0.761702
Target:  5'- --cGGGCGcGGAGGGaGGAcCCGGGGUc -3'
miRNA:   3'- gcaCCUGC-UCUUCCgCCU-GGUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 11705 0.67 0.761702
Target:  5'- cCGUGGAgGGGuGGGuCGGGaggcuCCGGGGg- -3'
miRNA:   3'- -GCACCUgCUCuUCC-GCCU-----GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 63263 0.67 0.761702
Target:  5'- gCGUcGGGgGcGggGGCGGAauaCAGGGg- -3'
miRNA:   3'- -GCA-CCUgCuCuuCCGCCUg--GUCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.