Results 81 - 100 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5241 | 3' | -58.4 | NC_001798.1 | + | 21529 | 0.67 | 0.752367 |
Target: 5'- gGUGGAUGGGuccucGCGGuacguaCAGGGUGg -3' miRNA: 3'- gCACCUGCUCuuc--CGCCug----GUCCCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 63263 | 0.67 | 0.761702 |
Target: 5'- gCGUcGGGgGcGggGGCGGAauaCAGGGg- -3' miRNA: 3'- -GCA-CCUgCuCuuCCGCCUg--GUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 11705 | 0.67 | 0.761702 |
Target: 5'- cCGUGGAgGGGuGGGuCGGGaggcuCCGGGGg- -3' miRNA: 3'- -GCACCUgCUCuUCC-GCCU-----GGUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 31804 | 0.67 | 0.761702 |
Target: 5'- --cGGGCGcGGAGGGaGGAcCCGGGGUc -3' miRNA: 3'- gcaCCUGC-UCUUCCgCCU-GGUCCCAc -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 69167 | 0.67 | 0.761702 |
Target: 5'- --cGGGCGGagcccGAuGGCGGGCCAG-GUGg -3' miRNA: 3'- gcaCCUGCU-----CUuCCGCCUGGUCcCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 11658 | 0.67 | 0.779132 |
Target: 5'- cCGgGGGCGGGGgucgggucucgggGGGaGGACgGGGGUGu -3' miRNA: 3'- -GCaCCUGCUCU-------------UCCgCCUGgUCCCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 125653 | 0.66 | 0.831751 |
Target: 5'- uCGcGGGCGAGGcggGGGCGGcugaggUCAGGGg- -3' miRNA: 3'- -GCaCCUGCUCU---UCCGCCu-----GGUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 30150 | 0.66 | 0.831751 |
Target: 5'- ----aGCGGGcGGG-GGGCCGGGGUGa -3' miRNA: 3'- gcaccUGCUCuUCCgCCUGGUCCCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 51069 | 0.66 | 0.823521 |
Target: 5'- aCGUGGACGAcGAcagcgAGGuCGaGGCCGcGGGg- -3' miRNA: 3'- -GCACCUGCU-CU-----UCC-GC-CUGGU-CCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 32538 | 0.66 | 0.831751 |
Target: 5'- uCGUGGACcagacgGGGAAcguGGCGGACCugcugcGGGc- -3' miRNA: 3'- -GCACCUG------CUCUU---CCGCCUGGu-----CCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 151165 | 0.66 | 0.831751 |
Target: 5'- cCG-GGccACGGGggGGUGGGCgaCAGGGc- -3' miRNA: 3'- -GCaCC--UGCUCuuCCGCCUG--GUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 28171 | 0.66 | 0.837409 |
Target: 5'- aGUGGGCGAacagccccccgagcGAGGGCGGggggaaggcGCCGGaGGc- -3' miRNA: 3'- gCACCUGCU--------------CUUCCGCC---------UGGUC-CCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 104780 | 0.66 | 0.831751 |
Target: 5'- --aGGuaGCGcGGAGGCGGGCCAGcaGGUc -3' miRNA: 3'- gcaCC--UGCuCUUCCGCCUGGUC--CCAc -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 23541 | 0.66 | 0.831751 |
Target: 5'- gCGgacGACGAGGAGGCGGgggugcccGCgAGGGc- -3' miRNA: 3'- -GCac-CUGCUCUUCCGCC--------UGgUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 111656 | 0.66 | 0.823521 |
Target: 5'- ---cGGCGGGggGGCGGAagagacgcUCGGGGa- -3' miRNA: 3'- gcacCUGCUCuuCCGCCU--------GGUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 10299 | 0.66 | 0.815126 |
Target: 5'- aCGgggGGACGAcgGggGGgGGGuuGGGGg- -3' miRNA: 3'- -GCa--CCUGCU--CuuCCgCCUggUCCCac -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 112477 | 0.66 | 0.815126 |
Target: 5'- gGUGGugGgaGGAGGGUggugggagcaaGGGCUGGcGGUGg -3' miRNA: 3'- gCACCugC--UCUUCCG-----------CCUGGUC-CCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 30488 | 0.66 | 0.815126 |
Target: 5'- --gGGAuccUGuGggGGUGGGCCcguGGGUGa -3' miRNA: 3'- gcaCCU---GCuCuuCCGCCUGGu--CCCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 149295 | 0.66 | 0.810012 |
Target: 5'- gGUGGcGCGAccGGAGGCcguGGAaguccagcgcgcccaCCAGGGUGc -3' miRNA: 3'- gCACC-UGCU--CUUCCG---CCU---------------GGUCCCAC- -5' |
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5241 | 3' | -58.4 | NC_001798.1 | + | 107848 | 0.66 | 0.806572 |
Target: 5'- uGUGGuguguccauaaGCGcGggGGUucgGGGCCAGGGcUGg -3' miRNA: 3'- gCACC-----------UGCuCuuCCG---CCUGGUCCC-AC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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