miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 31146 0.69 0.674766
Target:  5'- --cGGcGCGGGGGcGGCGGugCGGGGg- -3'
miRNA:   3'- gcaCC-UGCUCUU-CCGCCugGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 31804 0.67 0.761702
Target:  5'- --cGGGCGcGGAGGGaGGAcCCGGGGUc -3'
miRNA:   3'- gcaCCUGC-UCUUCCgCCU-GGUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 32538 0.66 0.831751
Target:  5'- uCGUGGACcagacgGGGAAcguGGCGGACCugcugcGGGc- -3'
miRNA:   3'- -GCACCUG------CUCUU---CCGCCUGGu-----CCCac -5'
5241 3' -58.4 NC_001798.1 + 33390 0.66 0.839808
Target:  5'- gGUGGGCaggaguGGGAGGGCGccuGGCuCGGGGa- -3'
miRNA:   3'- gCACCUG------CUCUUCCGC---CUG-GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 34156 0.68 0.7141
Target:  5'- aCGacGACGGGggGGgGGgaaACgGGGGUGg -3'
miRNA:   3'- -GCacCUGCUCuuCCgCC---UGgUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 36144 0.71 0.5555
Target:  5'- cCGgugGGGCGcGgcGGCGG-UCGGGGUGg -3'
miRNA:   3'- -GCa--CCUGCuCuuCCGCCuGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 36267 0.66 0.839808
Target:  5'- uGUGGAcccCGGGGugggcGGCGGGggGGGGUGc -3'
miRNA:   3'- gCACCU---GCUCUu----CCGCCUggUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 36305 0.73 0.425552
Target:  5'- gGUGuGGCGGcGggGcGCGGGCCGGGGc- -3'
miRNA:   3'- gCAC-CUGCU-CuuC-CGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 36419 0.72 0.479237
Target:  5'- --cGGGCGGGgcGGUGGGgCGGGGUc -3'
miRNA:   3'- gcaCCUGCUCuuCCGCCUgGUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 38283 0.72 0.488508
Target:  5'- aCGUGGcauucagacaguACGGGggGGC-GACguGGGUGa -3'
miRNA:   3'- -GCACC------------UGCUCuuCCGcCUGguCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 38802 0.67 0.797867
Target:  5'- aCGcGGuuGGcGAGGCGGGCCAGGaUGa -3'
miRNA:   3'- -GCaCCugCUcUUCCGCCUGGUCCcAC- -5'
5241 3' -58.4 NC_001798.1 + 39880 0.69 0.654867
Target:  5'- gGUGccGGCGuccucGGGGCGGGCCGGGGg- -3'
miRNA:   3'- gCAC--CUGCuc---UUCCGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 44398 0.67 0.780037
Target:  5'- aCGUGGGCcGGGAGcaauggggucccGCGGcCCAGGGc- -3'
miRNA:   3'- -GCACCUGcUCUUC------------CGCCuGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 45984 0.68 0.704345
Target:  5'- uCGUGGAUGuugucGGGGgGGAuCCAGGGg- -3'
miRNA:   3'- -GCACCUGCuc---UUCCgCCU-GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 48701 0.73 0.442172
Target:  5'- gGUGGggaagucACGAGGuuugGGGCGGcACUGGGGUGa -3'
miRNA:   3'- gCACC-------UGCUCU----UCCGCC-UGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 51069 0.66 0.823521
Target:  5'- aCGUGGACGAcGAcagcgAGGuCGaGGCCGcGGGg- -3'
miRNA:   3'- -GCACCUGCU-CU-----UCC-GC-CUGGU-CCCac -5'
5241 3' -58.4 NC_001798.1 + 51334 0.7 0.594994
Target:  5'- --gGGGCGGGuGGGCGGuuCGcGGGUGg -3'
miRNA:   3'- gcaCCUGCUCuUCCGCCugGU-CCCAC- -5'
5241 3' -58.4 NC_001798.1 + 52963 0.68 0.704345
Target:  5'- aCGUGucCGGGAGGcGCGcGACCGGGcUGg -3'
miRNA:   3'- -GCACcuGCUCUUC-CGC-CUGGUCCcAC- -5'
5241 3' -58.4 NC_001798.1 + 56174 0.71 0.5555
Target:  5'- cCGggGGACGgcgGGggGGUGGGgUGGGGUGu -3'
miRNA:   3'- -GCa-CCUGC---UCuuCCGCCUgGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 56203 0.69 0.68467
Target:  5'- nGUGGugGGuacGggGGaCGGAa-GGGGUGg -3'
miRNA:   3'- gCACCugCU---CuuCC-GCCUggUCCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.