miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 56516 0.67 0.789019
Target:  5'- gGUGGAgCG-GAucguGGCGGuGCCGGGGc- -3'
miRNA:   3'- gCACCU-GCuCUu---CCGCC-UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 59540 0.66 0.847685
Target:  5'- --gGGACcccGGAAGGCGGAgaGGGGg- -3'
miRNA:   3'- gcaCCUGc--UCUUCCGCCUggUCCCac -5'
5241 3' -58.4 NC_001798.1 + 61023 0.72 0.488508
Target:  5'- --cGGAUGGGGguuAGGgGGGCCGGGGg- -3'
miRNA:   3'- gcaCCUGCUCU---UCCgCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 63263 0.67 0.761702
Target:  5'- gCGUcGGGgGcGggGGCGGAauaCAGGGg- -3'
miRNA:   3'- -GCA-CCUgCuCuuCCGCCUg--GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 64343 1.09 0.002003
Target:  5'- gCGUGGACGAGAAGGCGGACCAGGGUGg -3'
miRNA:   3'- -GCACCUGCUCUUCCGCCUGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 64512 0.71 0.536031
Target:  5'- gGUGGGCGGGGuccaggcaAGGCaGGGCCuGGGc- -3'
miRNA:   3'- gCACCUGCUCU--------UCCG-CCUGGuCCCac -5'
5241 3' -58.4 NC_001798.1 + 66448 0.68 0.7141
Target:  5'- gCGUGuauGCGuuGGGGgGGACCGGGGg- -3'
miRNA:   3'- -GCACc--UGCucUUCCgCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 67185 0.68 0.722822
Target:  5'- aGgggGGAgGAGggGGCGGggggacaGCCuGGGGUc -3'
miRNA:   3'- gCa--CCUgCUCuuCCGCC-------UGG-UCCCAc -5'
5241 3' -58.4 NC_001798.1 + 69167 0.67 0.761702
Target:  5'- --cGGGCGGagcccGAuGGCGGGCCAG-GUGg -3'
miRNA:   3'- gcaCCUGCU-----CUuCCGCCUGGUCcCAC- -5'
5241 3' -58.4 NC_001798.1 + 69526 0.67 0.797867
Target:  5'- gCGUGGcccGCGAGcucGcGCGGGCUGGuGGUGg -3'
miRNA:   3'- -GCACC---UGCUCuu-C-CGCCUGGUC-CCAC- -5'
5241 3' -58.4 NC_001798.1 + 74515 0.68 0.74293
Target:  5'- gCG-GGGCGAGAucGGgGGGCuCGGGGc- -3'
miRNA:   3'- -GCaCCUGCUCUu-CCgCCUG-GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 85280 0.72 0.507296
Target:  5'- --aGGcuuCGGGggGGCGGggGCCGGGGUc -3'
miRNA:   3'- gcaCCu--GCUCuuCCGCC--UGGUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 85811 0.69 0.661843
Target:  5'- cCGgGGGCGAugacgggggggggcGggGGCGGGCgGGGGc- -3'
miRNA:   3'- -GCaCCUGCU--------------CuuCCGCCUGgUCCCac -5'
5241 3' -58.4 NC_001798.1 + 86413 0.7 0.60196
Target:  5'- uCGUGGACcAGcucGAGGCGGACCccgaggcgcagcccGGGGa- -3'
miRNA:   3'- -GCACCUGcUC---UUCCGCCUGG--------------UCCCac -5'
5241 3' -58.4 NC_001798.1 + 96029 0.68 0.7141
Target:  5'- cCGgcgGGGCGGGcGGGCGGGCgAcGGGc- -3'
miRNA:   3'- -GCa--CCUGCUCuUCCGCCUGgU-CCCac -5'
5241 3' -58.4 NC_001798.1 + 97573 0.74 0.408467
Target:  5'- --aGGACGGGGAGcGCGGccccgaGCCAGGGg- -3'
miRNA:   3'- gcaCCUGCUCUUC-CGCC------UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 100990 0.69 0.670795
Target:  5'- gCGUGGGCGGGGAGGgGGAggaaggcgcggaGGGGg- -3'
miRNA:   3'- -GCACCUGCUCUUCCgCCUgg----------UCCCac -5'
5241 3' -58.4 NC_001798.1 + 101849 0.68 0.7334
Target:  5'- gCGUGGGuccCGGcGgcGGCGGAggGGGGUGg -3'
miRNA:   3'- -GCACCU---GCU-CuuCCGCCUggUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 102473 0.75 0.337132
Target:  5'- gGUGGGCGGGAGGaggcggguaguGCGGggacgggccggcGCCGGGGUGu -3'
miRNA:   3'- gCACCUGCUCUUC-----------CGCC------------UGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 104780 0.66 0.831751
Target:  5'- --aGGuaGCGcGGAGGCGGGCCAGcaGGUc -3'
miRNA:   3'- gcaCC--UGCuCUUCCGCCUGGUC--CCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.