miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 107848 0.66 0.806572
Target:  5'- uGUGGuguguccauaaGCGcGggGGUucgGGGCCAGGGcUGg -3'
miRNA:   3'- gCACC-----------UGCuCuuCCG---CCUGGUCCC-AC- -5'
5241 3' -58.4 NC_001798.1 + 108839 0.71 0.565313
Target:  5'- cCGUGGGCGucuGGAcgacGGGCGGGCUGgcguucGGGUGc -3'
miRNA:   3'- -GCACCUGC---UCU----UCCGCCUGGU------CCCAC- -5'
5241 3' -58.4 NC_001798.1 + 111656 0.66 0.823521
Target:  5'- ---cGGCGGGggGGCGGAagagacgcUCGGGGa- -3'
miRNA:   3'- gcacCUGCUCuuCCGCCU--------GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 112477 0.66 0.815126
Target:  5'- gGUGGugGgaGGAGGGUggugggagcaaGGGCUGGcGGUGg -3'
miRNA:   3'- gCACCugC--UCUUCCG-----------CCUGGUC-CCAC- -5'
5241 3' -58.4 NC_001798.1 + 122069 0.68 0.704345
Target:  5'- gCGUcGGACGcGGAGGCGGugCuggcGGGc- -3'
miRNA:   3'- -GCA-CCUGCuCUUCCGCCugGu---CCCac -5'
5241 3' -58.4 NC_001798.1 + 122210 0.69 0.654867
Target:  5'- uCGcUGGuCGAGu-GGCuGGACCGcGGGUGg -3'
miRNA:   3'- -GC-ACCuGCUCuuCCG-CCUGGU-CCCAC- -5'
5241 3' -58.4 NC_001798.1 + 124565 0.68 0.7334
Target:  5'- gGUcGAUcucgGGGAGGGCGGcACCGGGGa- -3'
miRNA:   3'- gCAcCUG----CUCUUCCGCC-UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 125653 0.66 0.831751
Target:  5'- uCGcGGGCGAGGcggGGGCGGcugaggUCAGGGg- -3'
miRNA:   3'- -GCaCCUGCUCU---UCCGCCu-----GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 130896 0.69 0.674766
Target:  5'- --aGGACGuAGAuaAGGUGGGCCAGcuggcugaugcGGUGg -3'
miRNA:   3'- gcaCCUGC-UCU--UCCGCCUGGUC-----------CCAC- -5'
5241 3' -58.4 NC_001798.1 + 137474 0.71 0.536031
Target:  5'- gCGggGGuuGGGGAGGgGGGCCGGGGc- -3'
miRNA:   3'- -GCa-CCugCUCUUCCgCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 142480 0.68 0.723788
Target:  5'- aCG-GGACGGcccccGAGGCGGcGCgGGGGUGc -3'
miRNA:   3'- -GCaCCUGCUc----UUCCGCC-UGgUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 144575 0.69 0.644888
Target:  5'- --aGGGCGAGGacGGGCGG-CU-GGGUGg -3'
miRNA:   3'- gcaCCUGCUCU--UCCGCCuGGuCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 145818 0.71 0.565313
Target:  5'- aCGcGGGCGcGgcGGCGG-UCGGGGUGg -3'
miRNA:   3'- -GCaCCUGCuCuuCCGCCuGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 146088 0.71 0.57517
Target:  5'- cCG-GGGCGAGGcGGGCGGGCgAaggaaggggGGGUGg -3'
miRNA:   3'- -GCaCCUGCUCU-UCCGCCUGgU---------CCCAC- -5'
5241 3' -58.4 NC_001798.1 + 147010 0.68 0.74293
Target:  5'- uCGgGGACccccGGGCGGGCCGGGGc- -3'
miRNA:   3'- -GCaCCUGcucuUCCGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 148038 0.7 0.614922
Target:  5'- gCGUGGGCGc--GGGCGGG--GGGGUGg -3'
miRNA:   3'- -GCACCUGCucuUCCGCCUggUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 148066 0.76 0.308471
Target:  5'- aGUGGugGcGGAAGGaaaCGGGCCGGGGg- -3'
miRNA:   3'- gCACCugC-UCUUCC---GCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 148274 0.69 0.644888
Target:  5'- aGgagGGGCGGGcguGGCGGGCaggugugcgggCGGGGUGg -3'
miRNA:   3'- gCa--CCUGCUCuu-CCGCCUG-----------GUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 148410 0.7 0.594994
Target:  5'- --cGGGCGGGGuGGGCgccgGGGCgGGGGUGg -3'
miRNA:   3'- gcaCCUGCUCU-UCCG----CCUGgUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 149295 0.66 0.810012
Target:  5'- gGUGGcGCGAccGGAGGCcguGGAaguccagcgcgcccaCCAGGGUGc -3'
miRNA:   3'- gCACC-UGCU--CUUCCG---CCU---------------GGUCCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.