miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 33390 0.66 0.839808
Target:  5'- gGUGGGCaggaguGGGAGGGCGccuGGCuCGGGGa- -3'
miRNA:   3'- gCACCUG------CUCUUCCGC---CUG-GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 32538 0.66 0.831751
Target:  5'- uCGUGGACcagacgGGGAAcguGGCGGACCugcugcGGGc- -3'
miRNA:   3'- -GCACCUG------CUCUU---CCGCCUGGu-----CCCac -5'
5241 3' -58.4 NC_001798.1 + 31804 0.67 0.761702
Target:  5'- --cGGGCGcGGAGGGaGGAcCCGGGGUc -3'
miRNA:   3'- gcaCCUGC-UCUUCCgCCU-GGUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 31146 0.69 0.674766
Target:  5'- --cGGcGCGGGGGcGGCGGugCGGGGg- -3'
miRNA:   3'- gcaCC-UGCUCUU-CCGCCugGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 31044 0.69 0.673774
Target:  5'- gGUcGGGCGGGGgucGGGCGGgggucgggcacuaACCGGGGg- -3'
miRNA:   3'- gCA-CCUGCUCU---UCCGCC-------------UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 30978 0.67 0.797867
Target:  5'- gGUcGGGCGGGGgucgggcggGGGuCGGGCgGGGGUc -3'
miRNA:   3'- gCA-CCUGCUCU---------UCC-GCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 30945 0.76 0.308471
Target:  5'- gGUcGGGCG-GggGGCGGGCgGGGGUc -3'
miRNA:   3'- gCA-CCUGCuCuuCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 30488 0.66 0.815126
Target:  5'- --gGGAuccUGuGggGGUGGGCCcguGGGUGa -3'
miRNA:   3'- gcaCCU---GCuCuuCCGCCUGGu--CCCAC- -5'
5241 3' -58.4 NC_001798.1 + 30150 0.66 0.831751
Target:  5'- ----aGCGGGcGGG-GGGCCGGGGUGa -3'
miRNA:   3'- gcaccUGCUCuUCCgCCUGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 29924 0.67 0.780037
Target:  5'- gGUGGGCucGggGGCGGGacgcuugaCGGGGc- -3'
miRNA:   3'- gCACCUGcuCuuCCGCCUg-------GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 28171 0.66 0.837409
Target:  5'- aGUGGGCGAacagccccccgagcGAGGGCGGggggaaggcGCCGGaGGc- -3'
miRNA:   3'- gCACCUGCU--------------CUUCCGCC---------UGGUC-CCac -5'
5241 3' -58.4 NC_001798.1 + 27224 0.67 0.780037
Target:  5'- gCG-GGGCGcggGGGAGGCGGcCgCGGGGg- -3'
miRNA:   3'- -GCaCCUGC---UCUUCCGCCuG-GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 26997 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 26967 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 26938 0.76 0.294853
Target:  5'- --cGGGCGGGGucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU--UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 26908 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 26878 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 26848 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 26818 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 23541 0.66 0.831751
Target:  5'- gCGgacGACGAGGAGGCGGgggugcccGCgAGGGc- -3'
miRNA:   3'- -GCac-CUGCUCUUCCGCC--------UGgUCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.