miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 151165 0.66 0.831751
Target:  5'- cCG-GGccACGGGggGGUGGGCgaCAGGGc- -3'
miRNA:   3'- -GCaCC--UGCUCuuCCGCCUG--GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 28171 0.66 0.837409
Target:  5'- aGUGGGCGAacagccccccgagcGAGGGCGGggggaaggcGCCGGaGGc- -3'
miRNA:   3'- gCACCUGCU--------------CUUCCGCC---------UGGUC-CCac -5'
5241 3' -58.4 NC_001798.1 + 33390 0.66 0.839808
Target:  5'- gGUGGGCaggaguGGGAGGGCGccuGGCuCGGGGa- -3'
miRNA:   3'- gCACCUG------CUCUUCCGC---CUG-GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 20949 0.66 0.839808
Target:  5'- uCGUGu-UGAGGcGGGCGGGuCCGGGGg- -3'
miRNA:   3'- -GCACcuGCUCU-UCCGCCU-GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 36267 0.66 0.839808
Target:  5'- uGUGGAcccCGGGGugggcGGCGGGggGGGGUGc -3'
miRNA:   3'- gCACCU---GCUCUu----CCGCCUggUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 112477 0.66 0.815126
Target:  5'- gGUGGugGgaGGAGGGUggugggagcaaGGGCUGGcGGUGg -3'
miRNA:   3'- gCACCugC--UCUUCCG-----------CCUGGUC-CCAC- -5'
5241 3' -58.4 NC_001798.1 + 30488 0.66 0.815126
Target:  5'- --gGGAuccUGuGggGGUGGGCCcguGGGUGa -3'
miRNA:   3'- gcaCCU---GCuCuuCCGCCUGGu--CCCAC- -5'
5241 3' -58.4 NC_001798.1 + 31804 0.67 0.761702
Target:  5'- --cGGGCGcGGAGGGaGGAcCCGGGGUc -3'
miRNA:   3'- gcaCCUGC-UCUUCCgCCU-GGUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 69167 0.67 0.761702
Target:  5'- --cGGGCGGagcccGAuGGCGGGCCAG-GUGg -3'
miRNA:   3'- gcaCCUGCU-----CUuCCGCCUGGUCcCAC- -5'
5241 3' -58.4 NC_001798.1 + 11658 0.67 0.779132
Target:  5'- cCGgGGGCGGGGgucgggucucgggGGGaGGACgGGGGUGu -3'
miRNA:   3'- -GCaCCUGCUCU-------------UCCgCCUGgUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 29924 0.67 0.780037
Target:  5'- gGUGGGCucGggGGCGGGacgcuugaCGGGGc- -3'
miRNA:   3'- gCACCUGcuCuuCCGCCUg-------GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 44398 0.67 0.780037
Target:  5'- aCGUGGGCcGGGAGcaauggggucccGCGGcCCAGGGc- -3'
miRNA:   3'- -GCACCUGcUCUUC------------CGCCuGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 27224 0.67 0.780037
Target:  5'- gCG-GGGCGcggGGGAGGCGGcCgCGGGGg- -3'
miRNA:   3'- -GCaCCUGC---UCUUCCGCCuG-GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 56516 0.67 0.789019
Target:  5'- gGUGGAgCG-GAucguGGCGGuGCCGGGGc- -3'
miRNA:   3'- gCACCU-GCuCUu---CCGCC-UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 16228 0.67 0.797867
Target:  5'- uGUGGG-GGGgcGGUgGGGCCGGGGc- -3'
miRNA:   3'- gCACCUgCUCuuCCG-CCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 30978 0.67 0.797867
Target:  5'- gGUcGGGCGGGGgucgggcggGGGuCGGGCgGGGGUc -3'
miRNA:   3'- gCA-CCUGCUCU---------UCC-GCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 38802 0.67 0.797867
Target:  5'- aCGcGGuuGGcGAGGCGGGCCAGGaUGa -3'
miRNA:   3'- -GCaCCugCUcUUCCGCCUGGUCCcAC- -5'
5241 3' -58.4 NC_001798.1 + 69526 0.67 0.797867
Target:  5'- gCGUGGcccGCGAGcucGcGCGGGCUGGuGGUGg -3'
miRNA:   3'- -GCACC---UGCUCuu-C-CGCCUGGUC-CCAC- -5'
5241 3' -58.4 NC_001798.1 + 107848 0.66 0.806572
Target:  5'- uGUGGuguguccauaaGCGcGggGGUucgGGGCCAGGGcUGg -3'
miRNA:   3'- gCACC-----------UGCuCuuCCG---CCUGGUCCC-AC- -5'
5241 3' -58.4 NC_001798.1 + 149295 0.66 0.810012
Target:  5'- gGUGGcGCGAccGGAGGCcguGGAaguccagcgcgcccaCCAGGGUGc -3'
miRNA:   3'- gCACC-UGCU--CUUCCG---CCU---------------GGUCCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.